MySQL Not starting after update

[AniTexs]

MySQL service is just saying

2022-12-08T13:37:54.000Z Waiting for MySQL to come up

How can I help it?
Tried rebooting the server, no help there sadly.

[AniTexs]

I get this error in the BOX Logs

Dec 08 14:35:08 box:cloudron Startup task at index 2 failed: Network error waiting for mysql: connect ECONNREFUSED 172.18.0.3:3000 BoxError: Network error waiting for mysql: connect ECONNREFUSED 172.18.0.3:3000
at /home/yellowtent/box/src/services.js:588:33
at runMicrotasks (<anonymous>)
at processTicksAndRejections (node:internal/process/task_queues:96:5)
at async promiseRetry (/home/yellowtent/box/src/promise-retry.js:17:20)
at async waitForContainer (/home/yellowtent/box/src/services.js:583:5)
at async startMysql (/home/yellowtent/box/src/services.js:1150:9)
at async Object.startServices (/home/yellowtent/box/src/services.js:806:9)
at async Object.start (/home/yellowtent/box/src/platform.js:67:13)
at async onActivated (/home/yellowtent/box/src/cloudron.js:79:5)
at async Array.<anonymous> (/home/yellowtent/box/src/cloudron.js:130:9)

[AniTexs]

Tried updating server using apt update & apt upgrade
This is what apt list --upgradables returned

apt-utils/focal-updates 2.0.9 amd64 [upgradable from: 2.0.8]
apt/focal-updates 2.0.9 amd64 [upgradable from: 2.0.8]
base-files/focal-updates 11ubuntu5.6 amd64 [upgradable from: 11ubuntu5.5]
distro-info-data/focal-updates,focal-updates 0.43ubuntu1.11 all [upgradable from: 0.43ubuntu1.10]
keyutils/focal-updates 1.6-6ubuntu1.1 amd64 [upgradable from: 1.6-6ubuntu1]
language-pack-en-base/focal-updates,focal-updates 1:20.04+20220818 all [upgradable from: 1:20.04+20220211]
language-pack-en/focal-updates,focal-updates 1:20.04+20220818 all [upgradable from: 1:20.04+20220211]
language-pack-gnome-en-base/focal-updates,focal-updates 1:20.04+20220818 all [upgradable from: 1:20.04+20220211]
language-pack-gnome-en/focal-updates,focal-updates 1:20.04+20220818 all [upgradable from: 1:20.04+20220211]
libapt-pkg6.0/focal-updates 2.0.9 amd64 [upgradable from: 2.0.8]
libasn1-8-heimdal/focal-updates,focal-security 7.7.0+dfsg-1ubuntu1.2 amd64 [upgradable from: 7.7.0+dfsg-1ubuntu1.1]
libgssapi3-heimdal/focal-updates,focal-security 7.7.0+dfsg-1ubuntu1.2 amd64 [upgradable from: 7.7.0+dfsg-1ubuntu1.1]
libhcrypto4-heimdal/focal-updates,focal-security 7.7.0+dfsg-1ubuntu1.2 amd64 [upgradable from: 7.7.0+dfsg-1ubuntu1.1]
libheimbase1-heimdal/focal-updates,focal-security 7.7.0+dfsg-1ubuntu1.2 amd64 [upgradable from: 7.7.0+dfsg-1ubuntu1.1]
libheimntlm0-heimdal/focal-updates,focal-security 7.7.0+dfsg-1ubuntu1.2 amd64 [upgradable from: 7.7.0+dfsg-1ubuntu1.1]
libhx509-5-heimdal/focal-updates,focal-security 7.7.0+dfsg-1ubuntu1.2 amd64 [upgradable from: 7.7.0+dfsg-1ubuntu1.1]
libkeyutils1/focal-updates 1.6-6ubuntu1.1 amd64 [upgradable from: 1.6-6ubuntu1]
libkrb5-26-heimdal/focal-updates,focal-security 7.7.0+dfsg-1ubuntu1.2 amd64 [upgradable from: 7.7.0+dfsg-1ubuntu1.1]
libmysqlclient21/focal-updates 8.0.31-0ubuntu0.20.04.2 amd64 [upgradable from: 8.0.31-0ubuntu0.20.04.1]
libnetplan0/focal-updates 0.104-0ubuntu2~20.04.2 amd64 [upgradable from: 0.104-0ubuntu2~20.04.1]
libnotify4/focal-updates 0.7.9-1ubuntu3.20.04.2 amd64 [upgradable from: 0.7.9-1ubuntu2]
libroken18-heimdal/focal-updates,focal-security 7.7.0+dfsg-1ubuntu1.2 amd64 [upgradable from: 7.7.0+dfsg-1ubuntu1.1]
libsnmp-base/focal-updates,focal-updates 5.8+dfsg-2ubuntu2.5 all [upgradable from: 5.8+dfsg-2ubuntu2.4]
libsnmp35/focal-updates 5.8+dfsg-2ubuntu2.5 amd64 [upgradable from: 5.8+dfsg-2ubuntu2.4]
libudev1/focal-updates 245.4-4ubuntu3.19 amd64 [upgradable from: 245.4-4ubuntu3.17]
libwind0-heimdal/focal-updates,focal-security 7.7.0+dfsg-1ubuntu1.2 amd64 [upgradable from: 7.7.0+dfsg-1ubuntu1.1]
linux-firmware/focal-updates,focal-updates 1.187.35 all [upgradable from: 1.187.31]
mysql-client-8.0/focal-updates 8.0.31-0ubuntu0.20.04.2 amd64 [upgradable from: 8.0.31-0ubuntu0.20.04.1]
mysql-client-core-8.0/focal-updates 8.0.31-0ubuntu0.20.04.2 amd64 [upgradable from: 8.0.31-0ubuntu0.20.04.1]
mysql-server-8.0/focal-updates 8.0.31-0ubuntu0.20.04.2 amd64 [upgradable from: 8.0.31-0ubuntu0.20.04.1]
mysql-server-core-8.0/focal-updates 8.0.31-0ubuntu0.20.04.2 amd64 [upgradable from: 8.0.31-0ubuntu0.20.04.1]
netplan.io/focal-updates 0.104-0ubuntu2~20.04.2 amd64 [upgradable from: 0.104-0ubuntu2~20.04.1]
python-apt-common/focal-updates,focal-updates 2.0.0ubuntu0.20.04.8 all [upgradable from: 2.0.0ubuntu0.20.04.7]
python3-apt/focal-updates 2.0.0ubuntu0.20.04.8 amd64 [upgradable from: 2.0.0ubuntu0.20.04.7]
python3-distupgrade/focal-updates,focal-updates 1:20.04.39 all [upgradable from: 1:20.04.38]
ubuntu-advantage-tools/focal-updates 27.12~20.04.1 amd64 [upgradable from: 27.8~20.04.1]
ubuntu-release-upgrader-core/focal-updates,focal-updates 1:20.04.39 all [upgradable from: 1:20.04.38]
udev/focal-updates 245.4-4ubuntu3.19 amd64 [upgradable from: 245.4-4ubuntu3.17]
unattended-upgrades/focal-updates,focal-updates 2.3ubuntu0.3 all [upgradable from: 2.3ubuntu0.1]

[AniTexs]

@AniTexs said in MySQL Not starting after update:

I get this error in the BOX Logs

Dec 08 14:35:08 box:cloudron Startup task at index 2 failed: Network error waiting for mysql: connect ECONNREFUSED 172.18.0.3:3000 BoxError: Network error waiting for mysql: connect ECONNREFUSED 172.18.0.3:3000
at /home/yellowtent/box/src/services.js:588:33
at runMicrotasks (<anonymous>)
at processTicksAndRejections (node:internal/process/task_queues:96:5)
at async promiseRetry (/home/yellowtent/box/src/promise-retry.js:17:20)
at async waitForContainer (/home/yellowtent/box/src/services.js:583:5)
at async startMysql (/home/yellowtent/box/src/services.js:1150:9)
at async Object.startServices (/home/yellowtent/box/src/services.js:806:9)
at async Object.start (/home/yellowtent/box/src/platform.js:67:13)
at async onActivated (/home/yellowtent/box/src/cloudron.js:79:5)
at async Array.<anonymous> (/home/yellowtent/box/src/cloudron.js:130:9)

Still the same issue as this....

[nebulon]

Generally one should not run apt manually. Cloudron will automatically apply security updates. Updating or installing packages manually may break the instance.

In your case however the mysql in question anyways runs within its own container, so it is decoupled from the host system.

Can you run /home/yellowtent/box/setup/start.sh as root on the system and see if this fixes things up?

[AniTexs]

@nebulon Sadly not..
Heres the output of the script.

root@vmi260777:~# /home/yellowtent/box/setup/start.sh
2022-12-08T14:46:10 ==> start: Cloudron Start
media:x:500:
2022-12-08T14:46:10 ==> start: Configuring docker
Synchronizing state of apparmor.service with SysV service script with /lib/systemd/systemd-sysv-install.
Executing: /lib/systemd/systemd-sysv-install enable apparmor
2022-12-08T14:46:11 ==> start: Ensuring directories
2022-12-08T14:46:11 ==> start: Configuring journald
2022-12-08T14:46:11 ==> start: Setting up unbound
2022-12-08T14:46:11 ==> start: Adding systemd services
Synchronizing state of unbound.service with SysV service script with /lib/systemd/systemd-sysv-install.
Executing: /lib/systemd/systemd-sysv-install enable unbound
Synchronizing state of cron.service with SysV service script with /lib/systemd/systemd-sysv-install.
Executing: /lib/systemd/systemd-sysv-install enable cron
2022-12-08T14:46:15 ==> start: Configuring sudoers
2022-12-08T14:46:15 ==> start: Configuring collectd
2022-12-08T14:46:15 ==> start: Configuring sysctl
2022-12-08T14:46:15 ==> start: Configuring logrotate
2022-12-08T14:46:15 ==> start: Adding motd message for admins
2022-12-08T14:46:15 ==> start: Configuring nginx
2022-12-08T14:46:16 ==> start: Starting mysql
mysqladmin: [Warning] Using a password on the command line interface can be insecure.
Warning: Since password will be sent to server in plain text, use ssl connection to ensure password safety.
mysql: [Warning] Using a password on the command line interface can be insecure.
mysql: [Warning] Using a password on the command line interface can be insecure.
2022-12-08T14:46:16 ==> start: Migrating data
Ignoring invalid configuration option passed to Connection: driver. This is currently a warning, but in future versions of MySQL2, an error will be thrown if you pass an invalid configuration option to a Connection
[INFO] No migrations to run
[INFO] Done
2022-12-08T14:46:16 ==> start: Changing ownership
2022-12-08T14:46:16 ==> start: Starting Cloudron
2022-12-08T14:46:18 ==> start: Almost done

[girish]

@AniTexs Looks like this is the mysql addon/service that is not starting ? Please try this https://docs.cloudron.io/troubleshooting/#mysql-addon

[AniTexs]

@girish I restored from a backup to get it working..