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Graphite stuck starting

Scheduled Pinned Locked Moved Solved Support
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  • eyecreateE Offline
    eyecreateE Offline
    eyecreate
    wrote on last edited by
    #1

    On my cloudron instance, I can't see any disk stats because graphite is stuck starting. There seems to be a migration issue or something.

    Mar 14 17:34:59 Apply all migrations: account, admin, auth, contenttypes, dashboard, events, sessions, tagging, tags, url_shortener
    Mar 14 17:34:59 Running migrations:
    Mar 14 17:34:59 Traceback (most recent call last):
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/db/backends/utils.py", line 82, in _execute
    Mar 14 17:34:59 return self.cursor.execute(sql)
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/db/backends/sqlite3/base.py", line 381, in execute
    Mar 14 17:34:59 return Database.Cursor.execute(self, query)
    Mar 14 17:34:59 sqlite3.OperationalError: table "account_mygraph" already exists
    Mar 14 17:34:59 The above exception was the direct cause of the following exception:
    Mar 14 17:34:59 Traceback (most recent call last):
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/bin/django-admin.py", line 5, in <module>
    Mar 14 17:34:59 management.execute_from_command_line()
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/core/management/__init__.py", line 381, in execute_from_command_line
    Mar 14 17:34:59 utility.execute()
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/core/management/__init__.py", line 375, in execute
    Mar 14 17:34:59 self.fetch_command(subcommand).run_from_argv(self.argv)
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/core/management/base.py", line 323, in run_from_argv
    Mar 14 17:34:59 self.execute(*args, **cmd_options)
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/core/management/base.py", line 364, in execute
    Mar 14 17:34:59 output = self.handle(*args, **options)
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/core/management/base.py", line 83, in wrapped
    Mar 14 17:34:59 res = handle_func(*args, **kwargs)
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/core/management/commands/migrate.py", line 232, in handle
    Mar 14 17:34:59 post_migrate_state = executor.migrate(
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/db/migrations/executor.py", line 117, in migrate
    Mar 14 17:34:59 state = self._migrate_all_forwards(state, plan, full_plan, fake=fake, fake_initial=fake_initial)
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/db/migrations/executor.py", line 147, in _migrate_all_forwards
    Mar 14 17:34:59 state = self.apply_migration(state, migration, fake=fake, fake_initial=fake_initial)
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/db/migrations/executor.py", line 245, in apply_migration
    Mar 14 17:34:59 state = migration.apply(state, schema_editor)
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/db/migrations/migration.py", line 124, in apply
    Mar 14 17:34:59 operation.database_forwards(self.app_label, schema_editor, old_state, project_state)
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/db/migrations/operations/models.py", line 92, in database_forwards
    Mar 14 17:34:59 schema_editor.create_model(model)
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/db/backends/base/schema.py", line 307, in create_model
    Mar 14 17:34:59 self.execute(sql, params or None)
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/db/backends/base/schema.py", line 137, in execute
    Mar 14 17:34:59 cursor.execute(sql, params)
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/db/backends/utils.py", line 67, in execute
    Mar 14 17:34:59 return self._execute_with_wrappers(sql, params, many=False, executor=self._execute)
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/db/backends/utils.py", line 76, in _execute_with_wrappers
    Mar 14 17:34:59 return executor(sql, params, many, context)
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/db/backends/utils.py", line 84, in _execute
    Mar 14 17:34:59 return self.cursor.execute(sql, params)
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/db/utils.py", line 89, in __exit__
    Mar 14 17:34:59 raise dj_exc_value.with_traceback(traceback) from exc_value
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/db/backends/utils.py", line 82, in _execute
    Mar 14 17:34:59 return self.cursor.execute(sql)
    Mar 14 17:34:59 File "/usr/lib/python3/dist-packages/django/db/backends/sqlite3/base.py", line 381, in execute
    Mar 14 17:34:59 return Database.Cursor.execute(self, query)
    Mar 14 17:34:59 django.db.utils.OperationalError: table "account_mygraph" already exists
    Mar 14 17:34:59 Applying account.0001_initial...
    Mar 14 17:35:52 Graphite already initialized
    Mar 14 17:35:52 Operations to perform:
    Mar 14 17:35:52 Apply all migrations: account, admin, auth, contenttypes, dashboard, events, sessions, tagging, tags, url_shortener
    Mar 14 17:35:52 Running migrations:
    Mar 14 17:35:52 Traceback (most recent call last):
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/db/backends/utils.py", line 82, in _execute
    Mar 14 17:35:52 return self.cursor.execute(sql)
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/db/backends/sqlite3/base.py", line 381, in execute
    Mar 14 17:35:52 return Database.Cursor.execute(self, query)
    Mar 14 17:35:52 sqlite3.OperationalError: table "account_mygraph" already exists
    Mar 14 17:35:52 The above exception was the direct cause of the following exception:
    Mar 14 17:35:52 Traceback (most recent call last):
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/bin/django-admin.py", line 5, in <module>
    Mar 14 17:35:52 management.execute_from_command_line()
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/core/management/__init__.py", line 381, in execute_from_command_line
    Mar 14 17:35:52 utility.execute()
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/core/management/__init__.py", line 375, in execute
    Mar 14 17:35:52 self.fetch_command(subcommand).run_from_argv(self.argv)
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/core/management/base.py", line 323, in run_from_argv
    Mar 14 17:35:52 self.execute(*args, **cmd_options)
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/core/management/base.py", line 364, in execute
    Mar 14 17:35:52 output = self.handle(*args, **options)
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/core/management/base.py", line 83, in wrapped
    Mar 14 17:35:52 res = handle_func(*args, **kwargs)
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/core/management/commands/migrate.py", line 232, in handle
    Mar 14 17:35:52 post_migrate_state = executor.migrate(
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/db/migrations/executor.py", line 117, in migrate
    Mar 14 17:35:52 state = self._migrate_all_forwards(state, plan, full_plan, fake=fake, fake_initial=fake_initial)
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/db/migrations/executor.py", line 147, in _migrate_all_forwards
    Mar 14 17:35:52 state = self.apply_migration(state, migration, fake=fake, fake_initial=fake_initial)
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/db/migrations/executor.py", line 245, in apply_migration
    Mar 14 17:35:52 state = migration.apply(state, schema_editor)
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/db/migrations/migration.py", line 124, in apply
    Mar 14 17:35:52 operation.database_forwards(self.app_label, schema_editor, old_state, project_state)
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/db/migrations/operations/models.py", line 92, in database_forwards
    Mar 14 17:35:52 schema_editor.create_model(model)
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/db/backends/base/schema.py", line 307, in create_model
    Mar 14 17:35:52 self.execute(sql, params or None)
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/db/backends/base/schema.py", line 137, in execute
    Mar 14 17:35:52 cursor.execute(sql, params)
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/db/backends/utils.py", line 67, in execute
    Mar 14 17:35:52 return self._execute_with_wrappers(sql, params, many=False, executor=self._execute)
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/db/backends/utils.py", line 76, in _execute_with_wrappers
    Mar 14 17:35:52 return executor(sql, params, many, context)
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/db/backends/utils.py", line 84, in _execute
    Mar 14 17:35:52 return self.cursor.execute(sql, params)
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/db/utils.py", line 89, in __exit__
    Mar 14 17:35:52 raise dj_exc_value.with_traceback(traceback) from exc_value
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/db/backends/utils.py", line 82, in _execute
    Mar 14 17:35:52 return self.cursor.execute(sql)
    Mar 14 17:35:52 File "/usr/lib/python3/dist-packages/django/db/backends/sqlite3/base.py", line 381, in execute
    Mar 14 17:35:52 return Database.Cursor.execute(self, query)
    Mar 14 17:35:52 django.db.utils.OperationalError: table "account_mygraph" already exists
    Mar 14 17:35:52 Applying account.0001_initial...
    

    Is there a way I can correct this in the filesystem or is a patch needed?

    murgeroM 1 Reply Last reply
    0
  • murgeroM Offline
    murgeroM Offline
    murgero App Dev
    replied to eyecreate on last edited by
    #2

    @eyecreate Give the graphite service some more RAM. I had to do this a long time ago, thought it was patch but as a quick work around give it a try.

    --
    https://urgero.org
    ~ Professional Nerd. Freelance Programmer. ~
    Matrix: @murgero:urgero.org

    1 Reply Last reply
    0
  • nebulonN Online
    nebulonN Online
    nebulon Staff
    wrote on last edited by nebulon
    #3

    From another use reporting the same issue, if you don't care about stat history, you can purge the graphite database when running the following commands via SSH into your server:

    docker exec -ti graphite /bin/bash
    > rm -rf /var/lib/graphite/* && rm /var/lib/graphite/.initialized
    

    Then restart the service via the dashboard.

    edited the .initialized path

    eyecreateE 1 Reply Last reply
    0
  • eyecreateE Offline
    eyecreateE Offline
    eyecreate
    replied to nebulon on last edited by
    #4

    @nebulon Adding memory didn't do anything, but taking your direction to erase database ended up working out.

    Note that /var/lib/.initialized didn't exist and was in the graphite directory. Also, I had to manually stop and start the container and execute the command right away or docker wouldn't let me do anything because the container was in the process of restarting/starting.

    nebulonN 1 Reply Last reply
    1
  • nebulonN Online
    nebulonN Online
    nebulon Staff
    replied to eyecreate on last edited by
    #5

    @eyecreate ah good catch about the .initialized file, I've adjusted my snippet.

    1 Reply Last reply
    0

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