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  3. Backups failing due to lack of disk space, "Everything else" category consumes 50%

Backups failing due to lack of disk space, "Everything else" category consumes 50%

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  • infogulchI Offline
    infogulchI Offline
    infogulch
    wrote on last edited by infogulch
    #1

    My backups have been failing recently because of disk space. This wouldn't be surprising (if I use the space I use the space...) except over 50% of the disk space is in the "everything else" category:

    326b93e5-c453-4ead-bfa2-52f446b7dee2-image.png

    I ran some du commands locally and found that mysql is using 22GB by itself, mostly in 100M binlog.NNNNNN files:

    root@localhost:/var/lib/mysql# du -sh *
    4.0K    auto.cnf
    4.0K    binlog.000001
    4.0K    binlog.000002
    120K    binlog.000003
    101M    binlog.000004
    101M    binlog.000005
    101M    binlog.000006
    101M    binlog.000007
    101M    binlog.000008
    59M     binlog.000009
    101M    binlog.000010
    101M    binlog.000011
    101M    binlog.000012
    101M    binlog.000013
    101M    binlog.000014
    71M     binlog.000015
    101M    binlog.000016
    101M    binlog.000017
    101M    binlog.000018
    101M    binlog.000019
    101M    binlog.000020
    101M    binlog.000021
    19M     binlog.000022
    101M    binlog.000023
    101M    binlog.000024
    101M    binlog.000025
    101M    binlog.000026
    101M    binlog.000027
    101M    binlog.000028
    19M     binlog.000029
    101M    binlog.000030
    101M    binlog.000031
    101M    binlog.000032
    101M    binlog.000033
    101M    binlog.000034
    101M    binlog.000035
    85M     binlog.000036
    101M    binlog.000037
    101M    binlog.000038
    101M    binlog.000039
    101M    binlog.000040
    101M    binlog.000041
    101M    binlog.000042
    93M     binlog.000043
    101M    binlog.000044
    101M    binlog.000045
    101M    binlog.000046
    101M    binlog.000047
    101M    binlog.000048
    101M    binlog.000049
    88M     binlog.000050
    101M    binlog.000051
    101M    binlog.000052
    101M    binlog.000053
    101M    binlog.000054
    101M    binlog.000055
    101M    binlog.000056
    90M     binlog.000057
    101M    binlog.000058
    101M    binlog.000059
    101M    binlog.000060
    101M    binlog.000061
    101M    binlog.000062
    101M    binlog.000063
    91M     binlog.000064
    101M    binlog.000065
    101M    binlog.000066
    101M    binlog.000067
    101M    binlog.000068
    101M    binlog.000069
    101M    binlog.000070
    68M     binlog.000071
    101M    binlog.000072
    101M    binlog.000073
    101M    binlog.000074
    101M    binlog.000075
    101M    binlog.000076
    101M    binlog.000077
    69M     binlog.000078
    101M    binlog.000079
    101M    binlog.000080
    101M    binlog.000081
    101M    binlog.000082
    101M    binlog.000083
    101M    binlog.000084
    71M     binlog.000085
    101M    binlog.000086
    101M    binlog.000087
    101M    binlog.000088
    101M    binlog.000089
    101M    binlog.000090
    101M    binlog.000091
    70M     binlog.000092
    101M    binlog.000093
    101M    binlog.000094
    45M     binlog.000095
    101M    binlog.000096
    101M    binlog.000097
    101M    binlog.000098
    101M    binlog.000099
    32M     binlog.000100
    101M    binlog.000101
    101M    binlog.000102
    101M    binlog.000103
    101M    binlog.000104
    101M    binlog.000105
    101M    binlog.000106
    101M    binlog.000107
    101M    binlog.000108
    51M     binlog.000109
    101M    binlog.000110
    101M    binlog.000111
    101M    binlog.000112
    101M    binlog.000113
    101M    binlog.000114
    101M    binlog.000115
    101M    binlog.000116
    101M    binlog.000117
    101M    binlog.000118
    101M    binlog.000119
    101M    binlog.000120
    101M    binlog.000121
    101M    binlog.000122
    101M    binlog.000123
    101M    binlog.000124
    101M    binlog.000125
    101M    binlog.000126
    36M     binlog.000127
    101M    binlog.000128
    101M    binlog.000129
    101M    binlog.000130
    101M    binlog.000131
    101M    binlog.000132
    101M    binlog.000133
    101M    binlog.000134
    101M    binlog.000135
    101M    binlog.000136
    48M     binlog.000137
    101M    binlog.000138
    101M    binlog.000139
    101M    binlog.000140
    101M    binlog.000141
    101M    binlog.000142
    101M    binlog.000143
    101M    binlog.000144
    101M    binlog.000145
    101M    binlog.000146
    101M    binlog.000147
    101M    binlog.000148
    101M    binlog.000149
    15M     binlog.000150
    101M    binlog.000151
    101M    binlog.000152
    101M    binlog.000153
    101M    binlog.000154
    101M    binlog.000155
    101M    binlog.000156
    101M    binlog.000157
    101M    binlog.000158
    101M    binlog.000159
    101M    binlog.000160
    101M    binlog.000161
    101M    binlog.000162
    100M    binlog.000163
    101M    binlog.000164
    101M    binlog.000165
    101M    binlog.000166
    101M    binlog.000167
    101M    binlog.000168
    101M    binlog.000169
    101M    binlog.000170
    101M    binlog.000171
    101M    binlog.000172
    101M    binlog.000173
    9.7M    binlog.000174
    101M    binlog.000175
    101M    binlog.000176
    101M    binlog.000177
    101M    binlog.000178
    101M    binlog.000179
    101M    binlog.000180
    101M    binlog.000181
    101M    binlog.000182
    101M    binlog.000183
    101M    binlog.000184
    96M     binlog.000185
    101M    binlog.000186
    101M    binlog.000187
    101M    binlog.000188
    101M    binlog.000189
    101M    binlog.000190
    101M    binlog.000191
    101M    binlog.000192
    101M    binlog.000193
    101M    binlog.000194
    101M    binlog.000195
    95M     binlog.000196
    101M    binlog.000197
    101M    binlog.000198
    101M    binlog.000199
    101M    binlog.000200
    101M    binlog.000201
    101M    binlog.000202
    101M    binlog.000203
    101M    binlog.000204
    101M    binlog.000205
    101M    binlog.000206
    101M    binlog.000207
    33M     binlog.000208
    101M    binlog.000209
    101M    binlog.000210
    101M    binlog.000211
    101M    binlog.000212
    101M    binlog.000213
    101M    binlog.000214
    101M    binlog.000215
    101M    binlog.000216
    101M    binlog.000217
    101M    binlog.000218
    28M     binlog.000219
    101M    binlog.000220
    101M    binlog.000221
    101M    binlog.000222
    101M    binlog.000223
    101M    binlog.000224
    101M    binlog.000225
    101M    binlog.000226
    101M    binlog.000227
    80M     binlog.000228
    38M     binlog.000229
    101M    binlog.000230
    101M    binlog.000231
    101M    binlog.000232
    101M    binlog.000233
    101M    binlog.000234
    101M    binlog.000235
    41M     binlog.000236
    101M    binlog.000237
    101M    binlog.000238
    101M    binlog.000239
    101M    binlog.000240
    101M    binlog.000241
    13M     binlog.000242
    4.0K    binlog.index
    45M     box
    4.0K    ca-key.pem
    4.0K    ca.pem
    4.0K    client-cert.pem
    4.0K    client-key.pem
    0       debian-5.7.flag
    192K    #ib_16384_0.dblwr
    8.2M    #ib_16384_1.dblwr
    8.0K    ib_buffer_pool
    12M     ibdata1
    48M     ib_logfile0
    48M     ib_logfile1
    12M     ibtmp1
    804K    #innodb_temp
    

    It looks like regular maintenance by running PURGE BINARY LOGS BEFORE '<some date>'; is expected. Does cloudron do this today?

    This isn't an emergency so no rush (Happy Thanksgiving!). Thanks!

    nebulonN necrevistonnezrN 2 Replies Last reply
    2
    • infogulchI infogulch

      My backups have been failing recently because of disk space. This wouldn't be surprising (if I use the space I use the space...) except over 50% of the disk space is in the "everything else" category:

      326b93e5-c453-4ead-bfa2-52f446b7dee2-image.png

      I ran some du commands locally and found that mysql is using 22GB by itself, mostly in 100M binlog.NNNNNN files:

      root@localhost:/var/lib/mysql# du -sh *
      4.0K    auto.cnf
      4.0K    binlog.000001
      4.0K    binlog.000002
      120K    binlog.000003
      101M    binlog.000004
      101M    binlog.000005
      101M    binlog.000006
      101M    binlog.000007
      101M    binlog.000008
      59M     binlog.000009
      101M    binlog.000010
      101M    binlog.000011
      101M    binlog.000012
      101M    binlog.000013
      101M    binlog.000014
      71M     binlog.000015
      101M    binlog.000016
      101M    binlog.000017
      101M    binlog.000018
      101M    binlog.000019
      101M    binlog.000020
      101M    binlog.000021
      19M     binlog.000022
      101M    binlog.000023
      101M    binlog.000024
      101M    binlog.000025
      101M    binlog.000026
      101M    binlog.000027
      101M    binlog.000028
      19M     binlog.000029
      101M    binlog.000030
      101M    binlog.000031
      101M    binlog.000032
      101M    binlog.000033
      101M    binlog.000034
      101M    binlog.000035
      85M     binlog.000036
      101M    binlog.000037
      101M    binlog.000038
      101M    binlog.000039
      101M    binlog.000040
      101M    binlog.000041
      101M    binlog.000042
      93M     binlog.000043
      101M    binlog.000044
      101M    binlog.000045
      101M    binlog.000046
      101M    binlog.000047
      101M    binlog.000048
      101M    binlog.000049
      88M     binlog.000050
      101M    binlog.000051
      101M    binlog.000052
      101M    binlog.000053
      101M    binlog.000054
      101M    binlog.000055
      101M    binlog.000056
      90M     binlog.000057
      101M    binlog.000058
      101M    binlog.000059
      101M    binlog.000060
      101M    binlog.000061
      101M    binlog.000062
      101M    binlog.000063
      91M     binlog.000064
      101M    binlog.000065
      101M    binlog.000066
      101M    binlog.000067
      101M    binlog.000068
      101M    binlog.000069
      101M    binlog.000070
      68M     binlog.000071
      101M    binlog.000072
      101M    binlog.000073
      101M    binlog.000074
      101M    binlog.000075
      101M    binlog.000076
      101M    binlog.000077
      69M     binlog.000078
      101M    binlog.000079
      101M    binlog.000080
      101M    binlog.000081
      101M    binlog.000082
      101M    binlog.000083
      101M    binlog.000084
      71M     binlog.000085
      101M    binlog.000086
      101M    binlog.000087
      101M    binlog.000088
      101M    binlog.000089
      101M    binlog.000090
      101M    binlog.000091
      70M     binlog.000092
      101M    binlog.000093
      101M    binlog.000094
      45M     binlog.000095
      101M    binlog.000096
      101M    binlog.000097
      101M    binlog.000098
      101M    binlog.000099
      32M     binlog.000100
      101M    binlog.000101
      101M    binlog.000102
      101M    binlog.000103
      101M    binlog.000104
      101M    binlog.000105
      101M    binlog.000106
      101M    binlog.000107
      101M    binlog.000108
      51M     binlog.000109
      101M    binlog.000110
      101M    binlog.000111
      101M    binlog.000112
      101M    binlog.000113
      101M    binlog.000114
      101M    binlog.000115
      101M    binlog.000116
      101M    binlog.000117
      101M    binlog.000118
      101M    binlog.000119
      101M    binlog.000120
      101M    binlog.000121
      101M    binlog.000122
      101M    binlog.000123
      101M    binlog.000124
      101M    binlog.000125
      101M    binlog.000126
      36M     binlog.000127
      101M    binlog.000128
      101M    binlog.000129
      101M    binlog.000130
      101M    binlog.000131
      101M    binlog.000132
      101M    binlog.000133
      101M    binlog.000134
      101M    binlog.000135
      101M    binlog.000136
      48M     binlog.000137
      101M    binlog.000138
      101M    binlog.000139
      101M    binlog.000140
      101M    binlog.000141
      101M    binlog.000142
      101M    binlog.000143
      101M    binlog.000144
      101M    binlog.000145
      101M    binlog.000146
      101M    binlog.000147
      101M    binlog.000148
      101M    binlog.000149
      15M     binlog.000150
      101M    binlog.000151
      101M    binlog.000152
      101M    binlog.000153
      101M    binlog.000154
      101M    binlog.000155
      101M    binlog.000156
      101M    binlog.000157
      101M    binlog.000158
      101M    binlog.000159
      101M    binlog.000160
      101M    binlog.000161
      101M    binlog.000162
      100M    binlog.000163
      101M    binlog.000164
      101M    binlog.000165
      101M    binlog.000166
      101M    binlog.000167
      101M    binlog.000168
      101M    binlog.000169
      101M    binlog.000170
      101M    binlog.000171
      101M    binlog.000172
      101M    binlog.000173
      9.7M    binlog.000174
      101M    binlog.000175
      101M    binlog.000176
      101M    binlog.000177
      101M    binlog.000178
      101M    binlog.000179
      101M    binlog.000180
      101M    binlog.000181
      101M    binlog.000182
      101M    binlog.000183
      101M    binlog.000184
      96M     binlog.000185
      101M    binlog.000186
      101M    binlog.000187
      101M    binlog.000188
      101M    binlog.000189
      101M    binlog.000190
      101M    binlog.000191
      101M    binlog.000192
      101M    binlog.000193
      101M    binlog.000194
      101M    binlog.000195
      95M     binlog.000196
      101M    binlog.000197
      101M    binlog.000198
      101M    binlog.000199
      101M    binlog.000200
      101M    binlog.000201
      101M    binlog.000202
      101M    binlog.000203
      101M    binlog.000204
      101M    binlog.000205
      101M    binlog.000206
      101M    binlog.000207
      33M     binlog.000208
      101M    binlog.000209
      101M    binlog.000210
      101M    binlog.000211
      101M    binlog.000212
      101M    binlog.000213
      101M    binlog.000214
      101M    binlog.000215
      101M    binlog.000216
      101M    binlog.000217
      101M    binlog.000218
      28M     binlog.000219
      101M    binlog.000220
      101M    binlog.000221
      101M    binlog.000222
      101M    binlog.000223
      101M    binlog.000224
      101M    binlog.000225
      101M    binlog.000226
      101M    binlog.000227
      80M     binlog.000228
      38M     binlog.000229
      101M    binlog.000230
      101M    binlog.000231
      101M    binlog.000232
      101M    binlog.000233
      101M    binlog.000234
      101M    binlog.000235
      41M     binlog.000236
      101M    binlog.000237
      101M    binlog.000238
      101M    binlog.000239
      101M    binlog.000240
      101M    binlog.000241
      13M     binlog.000242
      4.0K    binlog.index
      45M     box
      4.0K    ca-key.pem
      4.0K    ca.pem
      4.0K    client-cert.pem
      4.0K    client-key.pem
      0       debian-5.7.flag
      192K    #ib_16384_0.dblwr
      8.2M    #ib_16384_1.dblwr
      8.0K    ib_buffer_pool
      12M     ibdata1
      48M     ib_logfile0
      48M     ib_logfile1
      12M     ibtmp1
      804K    #innodb_temp
      

      It looks like regular maintenance by running PURGE BINARY LOGS BEFORE '<some date>'; is expected. Does cloudron do this today?

      This isn't an emergency so no rush (Happy Thanksgiving!). Thanks!

      nebulonN Offline
      nebulonN Offline
      nebulon
      Staff
      wrote on last edited by
      #2

      @infogulch binlog is actually disabled since a few releases exactly because of this and also binlogs serve no real purpose the way Cloudron uses that mysql instance. Either way you can safely purge those, but can you first check how old they are? Also check, if /etc/mysql/mysql.cnf contains skip-log-bin.

      infogulchI 1 Reply Last reply
      4
      • nebulonN nebulon

        @infogulch binlog is actually disabled since a few releases exactly because of this and also binlogs serve no real purpose the way Cloudron uses that mysql instance. Either way you can safely purge those, but can you first check how old they are? Also check, if /etc/mysql/mysql.cnf contains skip-log-bin.

        infogulchI Offline
        infogulchI Offline
        infogulch
        wrote on last edited by infogulch
        #3

        @nebulon Good question, and thanks for the context. It seems they were all created in feb/march this year. Maybe it would have been a good idea to purge the binlogs as part of that release.

        After logging in with mysql -uroot -ppassword as described in troubleshooting, PURGE BINARY LOGS didn't do anything and SHOW BINARY LOGS just displayed an error that binlogs were not enabled, so I assume that mysql doesn't recognize them anymore, especially considering their age. So I ran rm binlog.*; I hope that didn't fuck it ¯_ (ツ)_/¯. The space is back now at least.

        1 Reply Last reply
        1
        • infogulchI infogulch

          My backups have been failing recently because of disk space. This wouldn't be surprising (if I use the space I use the space...) except over 50% of the disk space is in the "everything else" category:

          326b93e5-c453-4ead-bfa2-52f446b7dee2-image.png

          I ran some du commands locally and found that mysql is using 22GB by itself, mostly in 100M binlog.NNNNNN files:

          root@localhost:/var/lib/mysql# du -sh *
          4.0K    auto.cnf
          4.0K    binlog.000001
          4.0K    binlog.000002
          120K    binlog.000003
          101M    binlog.000004
          101M    binlog.000005
          101M    binlog.000006
          101M    binlog.000007
          101M    binlog.000008
          59M     binlog.000009
          101M    binlog.000010
          101M    binlog.000011
          101M    binlog.000012
          101M    binlog.000013
          101M    binlog.000014
          71M     binlog.000015
          101M    binlog.000016
          101M    binlog.000017
          101M    binlog.000018
          101M    binlog.000019
          101M    binlog.000020
          101M    binlog.000021
          19M     binlog.000022
          101M    binlog.000023
          101M    binlog.000024
          101M    binlog.000025
          101M    binlog.000026
          101M    binlog.000027
          101M    binlog.000028
          19M     binlog.000029
          101M    binlog.000030
          101M    binlog.000031
          101M    binlog.000032
          101M    binlog.000033
          101M    binlog.000034
          101M    binlog.000035
          85M     binlog.000036
          101M    binlog.000037
          101M    binlog.000038
          101M    binlog.000039
          101M    binlog.000040
          101M    binlog.000041
          101M    binlog.000042
          93M     binlog.000043
          101M    binlog.000044
          101M    binlog.000045
          101M    binlog.000046
          101M    binlog.000047
          101M    binlog.000048
          101M    binlog.000049
          88M     binlog.000050
          101M    binlog.000051
          101M    binlog.000052
          101M    binlog.000053
          101M    binlog.000054
          101M    binlog.000055
          101M    binlog.000056
          90M     binlog.000057
          101M    binlog.000058
          101M    binlog.000059
          101M    binlog.000060
          101M    binlog.000061
          101M    binlog.000062
          101M    binlog.000063
          91M     binlog.000064
          101M    binlog.000065
          101M    binlog.000066
          101M    binlog.000067
          101M    binlog.000068
          101M    binlog.000069
          101M    binlog.000070
          68M     binlog.000071
          101M    binlog.000072
          101M    binlog.000073
          101M    binlog.000074
          101M    binlog.000075
          101M    binlog.000076
          101M    binlog.000077
          69M     binlog.000078
          101M    binlog.000079
          101M    binlog.000080
          101M    binlog.000081
          101M    binlog.000082
          101M    binlog.000083
          101M    binlog.000084
          71M     binlog.000085
          101M    binlog.000086
          101M    binlog.000087
          101M    binlog.000088
          101M    binlog.000089
          101M    binlog.000090
          101M    binlog.000091
          70M     binlog.000092
          101M    binlog.000093
          101M    binlog.000094
          45M     binlog.000095
          101M    binlog.000096
          101M    binlog.000097
          101M    binlog.000098
          101M    binlog.000099
          32M     binlog.000100
          101M    binlog.000101
          101M    binlog.000102
          101M    binlog.000103
          101M    binlog.000104
          101M    binlog.000105
          101M    binlog.000106
          101M    binlog.000107
          101M    binlog.000108
          51M     binlog.000109
          101M    binlog.000110
          101M    binlog.000111
          101M    binlog.000112
          101M    binlog.000113
          101M    binlog.000114
          101M    binlog.000115
          101M    binlog.000116
          101M    binlog.000117
          101M    binlog.000118
          101M    binlog.000119
          101M    binlog.000120
          101M    binlog.000121
          101M    binlog.000122
          101M    binlog.000123
          101M    binlog.000124
          101M    binlog.000125
          101M    binlog.000126
          36M     binlog.000127
          101M    binlog.000128
          101M    binlog.000129
          101M    binlog.000130
          101M    binlog.000131
          101M    binlog.000132
          101M    binlog.000133
          101M    binlog.000134
          101M    binlog.000135
          101M    binlog.000136
          48M     binlog.000137
          101M    binlog.000138
          101M    binlog.000139
          101M    binlog.000140
          101M    binlog.000141
          101M    binlog.000142
          101M    binlog.000143
          101M    binlog.000144
          101M    binlog.000145
          101M    binlog.000146
          101M    binlog.000147
          101M    binlog.000148
          101M    binlog.000149
          15M     binlog.000150
          101M    binlog.000151
          101M    binlog.000152
          101M    binlog.000153
          101M    binlog.000154
          101M    binlog.000155
          101M    binlog.000156
          101M    binlog.000157
          101M    binlog.000158
          101M    binlog.000159
          101M    binlog.000160
          101M    binlog.000161
          101M    binlog.000162
          100M    binlog.000163
          101M    binlog.000164
          101M    binlog.000165
          101M    binlog.000166
          101M    binlog.000167
          101M    binlog.000168
          101M    binlog.000169
          101M    binlog.000170
          101M    binlog.000171
          101M    binlog.000172
          101M    binlog.000173
          9.7M    binlog.000174
          101M    binlog.000175
          101M    binlog.000176
          101M    binlog.000177
          101M    binlog.000178
          101M    binlog.000179
          101M    binlog.000180
          101M    binlog.000181
          101M    binlog.000182
          101M    binlog.000183
          101M    binlog.000184
          96M     binlog.000185
          101M    binlog.000186
          101M    binlog.000187
          101M    binlog.000188
          101M    binlog.000189
          101M    binlog.000190
          101M    binlog.000191
          101M    binlog.000192
          101M    binlog.000193
          101M    binlog.000194
          101M    binlog.000195
          95M     binlog.000196
          101M    binlog.000197
          101M    binlog.000198
          101M    binlog.000199
          101M    binlog.000200
          101M    binlog.000201
          101M    binlog.000202
          101M    binlog.000203
          101M    binlog.000204
          101M    binlog.000205
          101M    binlog.000206
          101M    binlog.000207
          33M     binlog.000208
          101M    binlog.000209
          101M    binlog.000210
          101M    binlog.000211
          101M    binlog.000212
          101M    binlog.000213
          101M    binlog.000214
          101M    binlog.000215
          101M    binlog.000216
          101M    binlog.000217
          101M    binlog.000218
          28M     binlog.000219
          101M    binlog.000220
          101M    binlog.000221
          101M    binlog.000222
          101M    binlog.000223
          101M    binlog.000224
          101M    binlog.000225
          101M    binlog.000226
          101M    binlog.000227
          80M     binlog.000228
          38M     binlog.000229
          101M    binlog.000230
          101M    binlog.000231
          101M    binlog.000232
          101M    binlog.000233
          101M    binlog.000234
          101M    binlog.000235
          41M     binlog.000236
          101M    binlog.000237
          101M    binlog.000238
          101M    binlog.000239
          101M    binlog.000240
          101M    binlog.000241
          13M     binlog.000242
          4.0K    binlog.index
          45M     box
          4.0K    ca-key.pem
          4.0K    ca.pem
          4.0K    client-cert.pem
          4.0K    client-key.pem
          0       debian-5.7.flag
          192K    #ib_16384_0.dblwr
          8.2M    #ib_16384_1.dblwr
          8.0K    ib_buffer_pool
          12M     ibdata1
          48M     ib_logfile0
          48M     ib_logfile1
          12M     ibtmp1
          804K    #innodb_temp
          

          It looks like regular maintenance by running PURGE BINARY LOGS BEFORE '<some date>'; is expected. Does cloudron do this today?

          This isn't an emergency so no rush (Happy Thanksgiving!). Thanks!

          necrevistonnezrN Offline
          necrevistonnezrN Offline
          necrevistonnezr
          wrote on last edited by
          #4

          @infogulch thanks for this topic, I had GB of binlogs as well!

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