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  3. Backups failing due to lack of disk space, "Everything else" category consumes 50%

Backups failing due to lack of disk space, "Everything else" category consumes 50%

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    • infogulchI Offline
      infogulchI Offline
      infogulch
      wrote on last edited by infogulch
      #1

      My backups have been failing recently because of disk space. This wouldn't be surprising (if I use the space I use the space...) except over 50% of the disk space is in the "everything else" category:

      326b93e5-c453-4ead-bfa2-52f446b7dee2-image.png

      I ran some du commands locally and found that mysql is using 22GB by itself, mostly in 100M binlog.NNNNNN files:

      root@localhost:/var/lib/mysql# du -sh *
      4.0K    auto.cnf
      4.0K    binlog.000001
      4.0K    binlog.000002
      120K    binlog.000003
      101M    binlog.000004
      101M    binlog.000005
      101M    binlog.000006
      101M    binlog.000007
      101M    binlog.000008
      59M     binlog.000009
      101M    binlog.000010
      101M    binlog.000011
      101M    binlog.000012
      101M    binlog.000013
      101M    binlog.000014
      71M     binlog.000015
      101M    binlog.000016
      101M    binlog.000017
      101M    binlog.000018
      101M    binlog.000019
      101M    binlog.000020
      101M    binlog.000021
      19M     binlog.000022
      101M    binlog.000023
      101M    binlog.000024
      101M    binlog.000025
      101M    binlog.000026
      101M    binlog.000027
      101M    binlog.000028
      19M     binlog.000029
      101M    binlog.000030
      101M    binlog.000031
      101M    binlog.000032
      101M    binlog.000033
      101M    binlog.000034
      101M    binlog.000035
      85M     binlog.000036
      101M    binlog.000037
      101M    binlog.000038
      101M    binlog.000039
      101M    binlog.000040
      101M    binlog.000041
      101M    binlog.000042
      93M     binlog.000043
      101M    binlog.000044
      101M    binlog.000045
      101M    binlog.000046
      101M    binlog.000047
      101M    binlog.000048
      101M    binlog.000049
      88M     binlog.000050
      101M    binlog.000051
      101M    binlog.000052
      101M    binlog.000053
      101M    binlog.000054
      101M    binlog.000055
      101M    binlog.000056
      90M     binlog.000057
      101M    binlog.000058
      101M    binlog.000059
      101M    binlog.000060
      101M    binlog.000061
      101M    binlog.000062
      101M    binlog.000063
      91M     binlog.000064
      101M    binlog.000065
      101M    binlog.000066
      101M    binlog.000067
      101M    binlog.000068
      101M    binlog.000069
      101M    binlog.000070
      68M     binlog.000071
      101M    binlog.000072
      101M    binlog.000073
      101M    binlog.000074
      101M    binlog.000075
      101M    binlog.000076
      101M    binlog.000077
      69M     binlog.000078
      101M    binlog.000079
      101M    binlog.000080
      101M    binlog.000081
      101M    binlog.000082
      101M    binlog.000083
      101M    binlog.000084
      71M     binlog.000085
      101M    binlog.000086
      101M    binlog.000087
      101M    binlog.000088
      101M    binlog.000089
      101M    binlog.000090
      101M    binlog.000091
      70M     binlog.000092
      101M    binlog.000093
      101M    binlog.000094
      45M     binlog.000095
      101M    binlog.000096
      101M    binlog.000097
      101M    binlog.000098
      101M    binlog.000099
      32M     binlog.000100
      101M    binlog.000101
      101M    binlog.000102
      101M    binlog.000103
      101M    binlog.000104
      101M    binlog.000105
      101M    binlog.000106
      101M    binlog.000107
      101M    binlog.000108
      51M     binlog.000109
      101M    binlog.000110
      101M    binlog.000111
      101M    binlog.000112
      101M    binlog.000113
      101M    binlog.000114
      101M    binlog.000115
      101M    binlog.000116
      101M    binlog.000117
      101M    binlog.000118
      101M    binlog.000119
      101M    binlog.000120
      101M    binlog.000121
      101M    binlog.000122
      101M    binlog.000123
      101M    binlog.000124
      101M    binlog.000125
      101M    binlog.000126
      36M     binlog.000127
      101M    binlog.000128
      101M    binlog.000129
      101M    binlog.000130
      101M    binlog.000131
      101M    binlog.000132
      101M    binlog.000133
      101M    binlog.000134
      101M    binlog.000135
      101M    binlog.000136
      48M     binlog.000137
      101M    binlog.000138
      101M    binlog.000139
      101M    binlog.000140
      101M    binlog.000141
      101M    binlog.000142
      101M    binlog.000143
      101M    binlog.000144
      101M    binlog.000145
      101M    binlog.000146
      101M    binlog.000147
      101M    binlog.000148
      101M    binlog.000149
      15M     binlog.000150
      101M    binlog.000151
      101M    binlog.000152
      101M    binlog.000153
      101M    binlog.000154
      101M    binlog.000155
      101M    binlog.000156
      101M    binlog.000157
      101M    binlog.000158
      101M    binlog.000159
      101M    binlog.000160
      101M    binlog.000161
      101M    binlog.000162
      100M    binlog.000163
      101M    binlog.000164
      101M    binlog.000165
      101M    binlog.000166
      101M    binlog.000167
      101M    binlog.000168
      101M    binlog.000169
      101M    binlog.000170
      101M    binlog.000171
      101M    binlog.000172
      101M    binlog.000173
      9.7M    binlog.000174
      101M    binlog.000175
      101M    binlog.000176
      101M    binlog.000177
      101M    binlog.000178
      101M    binlog.000179
      101M    binlog.000180
      101M    binlog.000181
      101M    binlog.000182
      101M    binlog.000183
      101M    binlog.000184
      96M     binlog.000185
      101M    binlog.000186
      101M    binlog.000187
      101M    binlog.000188
      101M    binlog.000189
      101M    binlog.000190
      101M    binlog.000191
      101M    binlog.000192
      101M    binlog.000193
      101M    binlog.000194
      101M    binlog.000195
      95M     binlog.000196
      101M    binlog.000197
      101M    binlog.000198
      101M    binlog.000199
      101M    binlog.000200
      101M    binlog.000201
      101M    binlog.000202
      101M    binlog.000203
      101M    binlog.000204
      101M    binlog.000205
      101M    binlog.000206
      101M    binlog.000207
      33M     binlog.000208
      101M    binlog.000209
      101M    binlog.000210
      101M    binlog.000211
      101M    binlog.000212
      101M    binlog.000213
      101M    binlog.000214
      101M    binlog.000215
      101M    binlog.000216
      101M    binlog.000217
      101M    binlog.000218
      28M     binlog.000219
      101M    binlog.000220
      101M    binlog.000221
      101M    binlog.000222
      101M    binlog.000223
      101M    binlog.000224
      101M    binlog.000225
      101M    binlog.000226
      101M    binlog.000227
      80M     binlog.000228
      38M     binlog.000229
      101M    binlog.000230
      101M    binlog.000231
      101M    binlog.000232
      101M    binlog.000233
      101M    binlog.000234
      101M    binlog.000235
      41M     binlog.000236
      101M    binlog.000237
      101M    binlog.000238
      101M    binlog.000239
      101M    binlog.000240
      101M    binlog.000241
      13M     binlog.000242
      4.0K    binlog.index
      45M     box
      4.0K    ca-key.pem
      4.0K    ca.pem
      4.0K    client-cert.pem
      4.0K    client-key.pem
      0       debian-5.7.flag
      192K    #ib_16384_0.dblwr
      8.2M    #ib_16384_1.dblwr
      8.0K    ib_buffer_pool
      12M     ibdata1
      48M     ib_logfile0
      48M     ib_logfile1
      12M     ibtmp1
      804K    #innodb_temp
      

      It looks like regular maintenance by running PURGE BINARY LOGS BEFORE '<some date>'; is expected. Does cloudron do this today?

      This isn't an emergency so no rush (Happy Thanksgiving!). Thanks!

      nebulonN necrevistonnezrN 2 Replies Last reply
      2
      • infogulchI infogulch

        My backups have been failing recently because of disk space. This wouldn't be surprising (if I use the space I use the space...) except over 50% of the disk space is in the "everything else" category:

        326b93e5-c453-4ead-bfa2-52f446b7dee2-image.png

        I ran some du commands locally and found that mysql is using 22GB by itself, mostly in 100M binlog.NNNNNN files:

        root@localhost:/var/lib/mysql# du -sh *
        4.0K    auto.cnf
        4.0K    binlog.000001
        4.0K    binlog.000002
        120K    binlog.000003
        101M    binlog.000004
        101M    binlog.000005
        101M    binlog.000006
        101M    binlog.000007
        101M    binlog.000008
        59M     binlog.000009
        101M    binlog.000010
        101M    binlog.000011
        101M    binlog.000012
        101M    binlog.000013
        101M    binlog.000014
        71M     binlog.000015
        101M    binlog.000016
        101M    binlog.000017
        101M    binlog.000018
        101M    binlog.000019
        101M    binlog.000020
        101M    binlog.000021
        19M     binlog.000022
        101M    binlog.000023
        101M    binlog.000024
        101M    binlog.000025
        101M    binlog.000026
        101M    binlog.000027
        101M    binlog.000028
        19M     binlog.000029
        101M    binlog.000030
        101M    binlog.000031
        101M    binlog.000032
        101M    binlog.000033
        101M    binlog.000034
        101M    binlog.000035
        85M     binlog.000036
        101M    binlog.000037
        101M    binlog.000038
        101M    binlog.000039
        101M    binlog.000040
        101M    binlog.000041
        101M    binlog.000042
        93M     binlog.000043
        101M    binlog.000044
        101M    binlog.000045
        101M    binlog.000046
        101M    binlog.000047
        101M    binlog.000048
        101M    binlog.000049
        88M     binlog.000050
        101M    binlog.000051
        101M    binlog.000052
        101M    binlog.000053
        101M    binlog.000054
        101M    binlog.000055
        101M    binlog.000056
        90M     binlog.000057
        101M    binlog.000058
        101M    binlog.000059
        101M    binlog.000060
        101M    binlog.000061
        101M    binlog.000062
        101M    binlog.000063
        91M     binlog.000064
        101M    binlog.000065
        101M    binlog.000066
        101M    binlog.000067
        101M    binlog.000068
        101M    binlog.000069
        101M    binlog.000070
        68M     binlog.000071
        101M    binlog.000072
        101M    binlog.000073
        101M    binlog.000074
        101M    binlog.000075
        101M    binlog.000076
        101M    binlog.000077
        69M     binlog.000078
        101M    binlog.000079
        101M    binlog.000080
        101M    binlog.000081
        101M    binlog.000082
        101M    binlog.000083
        101M    binlog.000084
        71M     binlog.000085
        101M    binlog.000086
        101M    binlog.000087
        101M    binlog.000088
        101M    binlog.000089
        101M    binlog.000090
        101M    binlog.000091
        70M     binlog.000092
        101M    binlog.000093
        101M    binlog.000094
        45M     binlog.000095
        101M    binlog.000096
        101M    binlog.000097
        101M    binlog.000098
        101M    binlog.000099
        32M     binlog.000100
        101M    binlog.000101
        101M    binlog.000102
        101M    binlog.000103
        101M    binlog.000104
        101M    binlog.000105
        101M    binlog.000106
        101M    binlog.000107
        101M    binlog.000108
        51M     binlog.000109
        101M    binlog.000110
        101M    binlog.000111
        101M    binlog.000112
        101M    binlog.000113
        101M    binlog.000114
        101M    binlog.000115
        101M    binlog.000116
        101M    binlog.000117
        101M    binlog.000118
        101M    binlog.000119
        101M    binlog.000120
        101M    binlog.000121
        101M    binlog.000122
        101M    binlog.000123
        101M    binlog.000124
        101M    binlog.000125
        101M    binlog.000126
        36M     binlog.000127
        101M    binlog.000128
        101M    binlog.000129
        101M    binlog.000130
        101M    binlog.000131
        101M    binlog.000132
        101M    binlog.000133
        101M    binlog.000134
        101M    binlog.000135
        101M    binlog.000136
        48M     binlog.000137
        101M    binlog.000138
        101M    binlog.000139
        101M    binlog.000140
        101M    binlog.000141
        101M    binlog.000142
        101M    binlog.000143
        101M    binlog.000144
        101M    binlog.000145
        101M    binlog.000146
        101M    binlog.000147
        101M    binlog.000148
        101M    binlog.000149
        15M     binlog.000150
        101M    binlog.000151
        101M    binlog.000152
        101M    binlog.000153
        101M    binlog.000154
        101M    binlog.000155
        101M    binlog.000156
        101M    binlog.000157
        101M    binlog.000158
        101M    binlog.000159
        101M    binlog.000160
        101M    binlog.000161
        101M    binlog.000162
        100M    binlog.000163
        101M    binlog.000164
        101M    binlog.000165
        101M    binlog.000166
        101M    binlog.000167
        101M    binlog.000168
        101M    binlog.000169
        101M    binlog.000170
        101M    binlog.000171
        101M    binlog.000172
        101M    binlog.000173
        9.7M    binlog.000174
        101M    binlog.000175
        101M    binlog.000176
        101M    binlog.000177
        101M    binlog.000178
        101M    binlog.000179
        101M    binlog.000180
        101M    binlog.000181
        101M    binlog.000182
        101M    binlog.000183
        101M    binlog.000184
        96M     binlog.000185
        101M    binlog.000186
        101M    binlog.000187
        101M    binlog.000188
        101M    binlog.000189
        101M    binlog.000190
        101M    binlog.000191
        101M    binlog.000192
        101M    binlog.000193
        101M    binlog.000194
        101M    binlog.000195
        95M     binlog.000196
        101M    binlog.000197
        101M    binlog.000198
        101M    binlog.000199
        101M    binlog.000200
        101M    binlog.000201
        101M    binlog.000202
        101M    binlog.000203
        101M    binlog.000204
        101M    binlog.000205
        101M    binlog.000206
        101M    binlog.000207
        33M     binlog.000208
        101M    binlog.000209
        101M    binlog.000210
        101M    binlog.000211
        101M    binlog.000212
        101M    binlog.000213
        101M    binlog.000214
        101M    binlog.000215
        101M    binlog.000216
        101M    binlog.000217
        101M    binlog.000218
        28M     binlog.000219
        101M    binlog.000220
        101M    binlog.000221
        101M    binlog.000222
        101M    binlog.000223
        101M    binlog.000224
        101M    binlog.000225
        101M    binlog.000226
        101M    binlog.000227
        80M     binlog.000228
        38M     binlog.000229
        101M    binlog.000230
        101M    binlog.000231
        101M    binlog.000232
        101M    binlog.000233
        101M    binlog.000234
        101M    binlog.000235
        41M     binlog.000236
        101M    binlog.000237
        101M    binlog.000238
        101M    binlog.000239
        101M    binlog.000240
        101M    binlog.000241
        13M     binlog.000242
        4.0K    binlog.index
        45M     box
        4.0K    ca-key.pem
        4.0K    ca.pem
        4.0K    client-cert.pem
        4.0K    client-key.pem
        0       debian-5.7.flag
        192K    #ib_16384_0.dblwr
        8.2M    #ib_16384_1.dblwr
        8.0K    ib_buffer_pool
        12M     ibdata1
        48M     ib_logfile0
        48M     ib_logfile1
        12M     ibtmp1
        804K    #innodb_temp
        

        It looks like regular maintenance by running PURGE BINARY LOGS BEFORE '<some date>'; is expected. Does cloudron do this today?

        This isn't an emergency so no rush (Happy Thanksgiving!). Thanks!

        nebulonN Offline
        nebulonN Offline
        nebulon
        Staff
        wrote on last edited by
        #2

        @infogulch binlog is actually disabled since a few releases exactly because of this and also binlogs serve no real purpose the way Cloudron uses that mysql instance. Either way you can safely purge those, but can you first check how old they are? Also check, if /etc/mysql/mysql.cnf contains skip-log-bin.

        infogulchI 1 Reply Last reply
        4
        • nebulonN nebulon

          @infogulch binlog is actually disabled since a few releases exactly because of this and also binlogs serve no real purpose the way Cloudron uses that mysql instance. Either way you can safely purge those, but can you first check how old they are? Also check, if /etc/mysql/mysql.cnf contains skip-log-bin.

          infogulchI Offline
          infogulchI Offline
          infogulch
          wrote on last edited by infogulch
          #3

          @nebulon Good question, and thanks for the context. It seems they were all created in feb/march this year. Maybe it would have been a good idea to purge the binlogs as part of that release.

          After logging in with mysql -uroot -ppassword as described in troubleshooting, PURGE BINARY LOGS didn't do anything and SHOW BINARY LOGS just displayed an error that binlogs were not enabled, so I assume that mysql doesn't recognize them anymore, especially considering their age. So I ran rm binlog.*; I hope that didn't fuck it ¯_ (ツ)_/¯. The space is back now at least.

          1 Reply Last reply
          1
          • infogulchI infogulch

            My backups have been failing recently because of disk space. This wouldn't be surprising (if I use the space I use the space...) except over 50% of the disk space is in the "everything else" category:

            326b93e5-c453-4ead-bfa2-52f446b7dee2-image.png

            I ran some du commands locally and found that mysql is using 22GB by itself, mostly in 100M binlog.NNNNNN files:

            root@localhost:/var/lib/mysql# du -sh *
            4.0K    auto.cnf
            4.0K    binlog.000001
            4.0K    binlog.000002
            120K    binlog.000003
            101M    binlog.000004
            101M    binlog.000005
            101M    binlog.000006
            101M    binlog.000007
            101M    binlog.000008
            59M     binlog.000009
            101M    binlog.000010
            101M    binlog.000011
            101M    binlog.000012
            101M    binlog.000013
            101M    binlog.000014
            71M     binlog.000015
            101M    binlog.000016
            101M    binlog.000017
            101M    binlog.000018
            101M    binlog.000019
            101M    binlog.000020
            101M    binlog.000021
            19M     binlog.000022
            101M    binlog.000023
            101M    binlog.000024
            101M    binlog.000025
            101M    binlog.000026
            101M    binlog.000027
            101M    binlog.000028
            19M     binlog.000029
            101M    binlog.000030
            101M    binlog.000031
            101M    binlog.000032
            101M    binlog.000033
            101M    binlog.000034
            101M    binlog.000035
            85M     binlog.000036
            101M    binlog.000037
            101M    binlog.000038
            101M    binlog.000039
            101M    binlog.000040
            101M    binlog.000041
            101M    binlog.000042
            93M     binlog.000043
            101M    binlog.000044
            101M    binlog.000045
            101M    binlog.000046
            101M    binlog.000047
            101M    binlog.000048
            101M    binlog.000049
            88M     binlog.000050
            101M    binlog.000051
            101M    binlog.000052
            101M    binlog.000053
            101M    binlog.000054
            101M    binlog.000055
            101M    binlog.000056
            90M     binlog.000057
            101M    binlog.000058
            101M    binlog.000059
            101M    binlog.000060
            101M    binlog.000061
            101M    binlog.000062
            101M    binlog.000063
            91M     binlog.000064
            101M    binlog.000065
            101M    binlog.000066
            101M    binlog.000067
            101M    binlog.000068
            101M    binlog.000069
            101M    binlog.000070
            68M     binlog.000071
            101M    binlog.000072
            101M    binlog.000073
            101M    binlog.000074
            101M    binlog.000075
            101M    binlog.000076
            101M    binlog.000077
            69M     binlog.000078
            101M    binlog.000079
            101M    binlog.000080
            101M    binlog.000081
            101M    binlog.000082
            101M    binlog.000083
            101M    binlog.000084
            71M     binlog.000085
            101M    binlog.000086
            101M    binlog.000087
            101M    binlog.000088
            101M    binlog.000089
            101M    binlog.000090
            101M    binlog.000091
            70M     binlog.000092
            101M    binlog.000093
            101M    binlog.000094
            45M     binlog.000095
            101M    binlog.000096
            101M    binlog.000097
            101M    binlog.000098
            101M    binlog.000099
            32M     binlog.000100
            101M    binlog.000101
            101M    binlog.000102
            101M    binlog.000103
            101M    binlog.000104
            101M    binlog.000105
            101M    binlog.000106
            101M    binlog.000107
            101M    binlog.000108
            51M     binlog.000109
            101M    binlog.000110
            101M    binlog.000111
            101M    binlog.000112
            101M    binlog.000113
            101M    binlog.000114
            101M    binlog.000115
            101M    binlog.000116
            101M    binlog.000117
            101M    binlog.000118
            101M    binlog.000119
            101M    binlog.000120
            101M    binlog.000121
            101M    binlog.000122
            101M    binlog.000123
            101M    binlog.000124
            101M    binlog.000125
            101M    binlog.000126
            36M     binlog.000127
            101M    binlog.000128
            101M    binlog.000129
            101M    binlog.000130
            101M    binlog.000131
            101M    binlog.000132
            101M    binlog.000133
            101M    binlog.000134
            101M    binlog.000135
            101M    binlog.000136
            48M     binlog.000137
            101M    binlog.000138
            101M    binlog.000139
            101M    binlog.000140
            101M    binlog.000141
            101M    binlog.000142
            101M    binlog.000143
            101M    binlog.000144
            101M    binlog.000145
            101M    binlog.000146
            101M    binlog.000147
            101M    binlog.000148
            101M    binlog.000149
            15M     binlog.000150
            101M    binlog.000151
            101M    binlog.000152
            101M    binlog.000153
            101M    binlog.000154
            101M    binlog.000155
            101M    binlog.000156
            101M    binlog.000157
            101M    binlog.000158
            101M    binlog.000159
            101M    binlog.000160
            101M    binlog.000161
            101M    binlog.000162
            100M    binlog.000163
            101M    binlog.000164
            101M    binlog.000165
            101M    binlog.000166
            101M    binlog.000167
            101M    binlog.000168
            101M    binlog.000169
            101M    binlog.000170
            101M    binlog.000171
            101M    binlog.000172
            101M    binlog.000173
            9.7M    binlog.000174
            101M    binlog.000175
            101M    binlog.000176
            101M    binlog.000177
            101M    binlog.000178
            101M    binlog.000179
            101M    binlog.000180
            101M    binlog.000181
            101M    binlog.000182
            101M    binlog.000183
            101M    binlog.000184
            96M     binlog.000185
            101M    binlog.000186
            101M    binlog.000187
            101M    binlog.000188
            101M    binlog.000189
            101M    binlog.000190
            101M    binlog.000191
            101M    binlog.000192
            101M    binlog.000193
            101M    binlog.000194
            101M    binlog.000195
            95M     binlog.000196
            101M    binlog.000197
            101M    binlog.000198
            101M    binlog.000199
            101M    binlog.000200
            101M    binlog.000201
            101M    binlog.000202
            101M    binlog.000203
            101M    binlog.000204
            101M    binlog.000205
            101M    binlog.000206
            101M    binlog.000207
            33M     binlog.000208
            101M    binlog.000209
            101M    binlog.000210
            101M    binlog.000211
            101M    binlog.000212
            101M    binlog.000213
            101M    binlog.000214
            101M    binlog.000215
            101M    binlog.000216
            101M    binlog.000217
            101M    binlog.000218
            28M     binlog.000219
            101M    binlog.000220
            101M    binlog.000221
            101M    binlog.000222
            101M    binlog.000223
            101M    binlog.000224
            101M    binlog.000225
            101M    binlog.000226
            101M    binlog.000227
            80M     binlog.000228
            38M     binlog.000229
            101M    binlog.000230
            101M    binlog.000231
            101M    binlog.000232
            101M    binlog.000233
            101M    binlog.000234
            101M    binlog.000235
            41M     binlog.000236
            101M    binlog.000237
            101M    binlog.000238
            101M    binlog.000239
            101M    binlog.000240
            101M    binlog.000241
            13M     binlog.000242
            4.0K    binlog.index
            45M     box
            4.0K    ca-key.pem
            4.0K    ca.pem
            4.0K    client-cert.pem
            4.0K    client-key.pem
            0       debian-5.7.flag
            192K    #ib_16384_0.dblwr
            8.2M    #ib_16384_1.dblwr
            8.0K    ib_buffer_pool
            12M     ibdata1
            48M     ib_logfile0
            48M     ib_logfile1
            12M     ibtmp1
            804K    #innodb_temp
            

            It looks like regular maintenance by running PURGE BINARY LOGS BEFORE '<some date>'; is expected. Does cloudron do this today?

            This isn't an emergency so no rush (Happy Thanksgiving!). Thanks!

            necrevistonnezrN Offline
            necrevistonnezrN Offline
            necrevistonnezr
            wrote on last edited by
            #4

            @infogulch thanks for this topic, I had GB of binlogs as well!

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