Vaultwarden fails to start after update – DB migration error (SSO)

[IniBudi]

@james said in Vaultwarden fails to start after update – DB migration error (SSO):

Hello @archos
I think, I have the same issue.
This is the log:

[2025-12-29 19:23:43.075][panic][ERROR] thread 'main' panicked at 'Error running migrations: QueryError(DieselMigrationName { name: "2024-03-06-170000_add_sso_users", version: MigrationVersion("20240306170000") }, DatabaseError(Unknown, "Referencing column 'user_uuid' and referenced column 'uuid' in foreign key constraint 'sso_users_ibfk_1' are incompatible."))': src/db/mod.rs:505

And seems to be already reported upstream: https://github.com/dani-garcia/vaultwarden/issues/6611

---

EDIT:
I followed the guided instructions and was able to fix it => https://github.com/dani-garcia/vaultwarden/wiki/Using-the-MariaDB-(MySQL)-Backend#foreign-key-errors-collation-and-charset

be sure to replace "vaultwarden" in the SQL querries with your cloudron database name.

I experienced the exact same issue when upgrading to the latest version. I managed to resolve it following @james's suggestion.

Here is a recap of the step-by-step process I executed, which might help others:

• 1. Enter Recovery Mode
     Go to the Cloudron dashboard and enable Recovery Mode for your Vaultwarden application.
• 2. Access the MySQL Database
     Open the application Terminal and click the MySQL button to access the database console..
• 3. Identify the Vaultwarden Database Name
     Run the following command to see the list of databases:

SHOW DATABASES;

Note the database name that appears (it is usually a random string like 9121d...). You will need this for the next steps.

• 4. Change the Database Charset

Replace YourDatabaseVaultwarden in the command below with the actual database name retrieved in Step 3, then run:

ALTER DATABASE `YourDatabaseVaultwarden` CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci; 

• 5. Generate Table Modification Commands
     Run this query to generate the specific ALTER TABLE commands for your existing tables:

SELECT CONCAT('ALTER TABLE `', TABLE_NAME,'` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;') 
FROM INFORMATION_SCHEMA.TABLES
WHERE TABLE_SCHEMA="YourDatabaseVaultwarden"
AND TABLE_TYPE="BASE TABLE";

Copy the output generated by this command. You can paste this list into ChatGPT or Gemini and ask it to format it for the next step (wrapping it between the foreign key check commands).

• 6. Execute the Final Fix
     The final command block should follow this structure:

SET foreign_key_checks=0;
-- Copy/Paste the output from above here
SET foreign_key_checks=1;

If you are unsure about the formatting, I simply copied the raw table list from the terminal in Step 5 and asked an AI to format it into valid MySQL syntax using the structure above.

Here is an example of what the final command looks like (Note: Do not copy-paste the specific table list below; use the one generated from your own database in Step 5, as your tables might differ):

SET foreign_key_checks=0;
ALTER TABLE `__diesel_schema_migrations` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `attachments` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `ciphers_collections` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `ciphers` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `collections` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `devices` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `emergency_access` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `favorites` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `folders_ciphers` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `folders` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `invitations` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `org_policies` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `organizations` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `sends` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `twofactor_incomplete` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `twofactor` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `users_collections` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `users_organizations` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
ALTER TABLE `users` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;
SET foreign_key_checks=1;

Once you have adapted the command to your specific tables, execute it in the MySQL terminal.

Finally, disable Recovery Mode and restart your Vaultwarden app. Hopefully, this serves as a solution for you as well.

Apologies if there are any technical inaccuracies; I utilized AI to guide me through this solution, and thankfully, it worked perfectly.

Thanks,
Regards

[archos]

@IniBudi Many thanks for the guide, everything seems to be working fine now.
The application has been successfully updated and is running properly.

[sangemaru]

Description

Aplication not responding. Investigated logs show database migration error.

Steps to reproduce

Vaultwarden App updated to 1.23.0

Logs

2025-12-30T08:56:20Z /--------------------------------------------------------------------\
2025-12-30T08:56:20Z 0: vaultwarden::init_logging::{{closure}}
2025-12-30T08:56:20Z 10: std::sys::backtrace::__rust_begin_short_backtrace
2025-12-30T08:56:20Z 11: main
2025-12-30T08:56:20Z 12: <unknown>
2025-12-30T08:56:20Z 13: __libc_start_main
2025-12-30T08:56:20Z 14: _start
2025-12-30T08:56:20Z 1: std::panicking::panic_with_hook
2025-12-30T08:56:20Z 2: std::panicking::panic_handler::{{closure}}
2025-12-30T08:56:20Z 3: std::sys::backtrace::__rust_end_short_backtrace
2025-12-30T08:56:20Z 4: __rustc::rust_begin_unwind
2025-12-30T08:56:20Z 5: core::panicking::panic_fmt
2025-12-30T08:56:20Z 6: core::result::unwrap_failed
2025-12-30T08:56:20Z 7: vaultwarden::db::DbPool::from_config
2025-12-30T08:56:20Z 8: vaultwarden::main::{{closure}}
2025-12-30T08:56:20Z 9: vaultwarden::main
2025-12-30T08:56:20Z => Exporting env vars expected by Vaultwarden
2025-12-30T08:56:20Z => Starting Bitwarden
2025-12-30T08:56:20Z Please generate a secure Argon2 PHC string by using `vaultwarden hash` or `argon2`.
2025-12-30T08:56:20Z See: https://github.com/dani-garcia/vaultwarden/wiki/Enabling-admin-page#secure-the-admin_token
2025-12-30T08:56:20Z [2025-12-30 08:56:20.876][panic][ERROR] thread 'main' panicked at 'Error running migrations: QueryError(DieselMigrationName { name: "2024-03-06-170000_add_sso_users", version: MigrationVersion("20240306170000") }, DatabaseError(Unknown, "Referencing column 'user_uuid' and referenced column 'uuid' in foreign key constraint 'sso_users_ibfk_1' are incompatible."))': src/db/mod.rs:505

Troubleshooting Already Performed

Restored 1.22.2 application Backup restored functionality

System Details

Generate Diagnostics Data

Diagnostic Data sent to support@cloudron.io

Cloudron Version

9.0.15

Ubuntu Version

Distributor ID:	Ubuntu
Description:	Ubuntu 24.04.3 LTS
Release:	24.04
Codename:	noble

Cloudron installation method

• Manual with ./cloudron-setup

Output of cloudron-support --troubleshoot

Vendor: netcup Product: KVM Server
Linux: 6.8.0-90-generic
Ubuntu: noble 24.04
Execution environment: kvm
Processor: AMD EPYC 9645 96-Core Processor
BIOS pc-i440fx-9.2  CPU @ 2.0GHz x 8
RAM: 16370004KB
Disk: /dev/vda1       425G
[OK]	node version is correct
[OK]	IPv6 is enabled and public IPv6 address is working
[OK]	docker is running
[OK]	docker version is correct
[OK]	MySQL is running
[OK]	nginx is running
[OK]	dashboard cert is valid
[OK]	dashboard is reachable via loopback
[OK]	No pending database migrations
[OK]	Service 'mysql' is running and healthy
[OK]	Service 'postgresql' is running and healthy
[OK]	Service 'mongodb' is running and healthy
[OK]	Service 'mail' is running and healthy
[OK]	Service 'graphite' is running and healthy
[OK]	Service 'sftp' is running and healthy
[OK]	box v9.0.15 is running
[OK]	netplan is good
[OK]	DNS is resolving via systemd-resolved
[OK]	Dashboard is reachable via domain name
[WARN]	Domain serenichron.agency expiry check skipped because whois does not have this information
[OK]	unbound is running

[fbartels]

This has been reported along with a potential fix in https://forum.cloudron.io/topic/14812/vaultwarden-fails-to-start-after-update-db-migration-error-sso

[jadudm]

The fix that @inibudi posted worked for me.

[jdaviescoates]

@archos said in Vaultwarden fails to start after update – DB migration error (SSO):

After updating the Vaultwarden app on Cloudron

From/ to which version?

[james]

Hello @jdaviescoates
From version Cloudron package version 1.22.2 => Vaultwarden Version 1.34.3 to Cloudron package version 1.23.0 => Vaultwarden Version 1.35.0

[jdaviescoates]

@james OK, thanks. Looks like that is the pending update I have. Is there anyway to avoid having to do the fix above post update? Might another Cloudron package be released that has the fix?

[mazarian]

Thank you! This saved me a lot of time and fixed the issue. I followed your steps and appreciated the ChatGPT workaround.

[james]

Hello @jdaviescoates

@jdaviescoates said in Vaultwarden fails to start after update – DB migration error (SSO):

Might another Cloudron package be released that has the fix?

A fresh Vaultwarden installation will not have this issue.
About including a fix within the package.
We will have to look into it.

[james]

Hello @vaultwarden users

Since users have voiced their concerns about manually editing the database I have created a bash script that does it for you.
Please follow these steps if you have this issue:

1. create an app backup of your @vaultwarden Cloudron app
2. put the erroring @vaultwarden app in recovery mode
3. open the File Manager of your @vaultwarden app and create a fix_db.sh file
4. copy and paste the following script into the just created fix_db.sh file:

   #!/bin/bash
   
   echo "=> Checking if DEFAULT_CHARACTER_SET_NAME and DEFAULT_COLLATION_NAME are set to utf8mb4 and utf8mb4_unicode_ci"
   
   CURRENT_DEFAULT_CHARACTER_SET_NAME=$(mysql --silent --skip-column-names --user=${CLOUDRON_MYSQL_USERNAME} --password=${CLOUDRON_MYSQL_PASSWORD} --host=${CLOUDRON_MYSQL_HOST} ${CLOUDRON_MYSQL_DATABASE} -e "SELECT DEFAULT_CHARACTER_SET_NAME FROM information_schema.SCHEMATA WHERE SCHEMA_NAME = '${CLOUDRON_MYSQL_DATABASE}';" 2>/dev/null)
   CURRENT_DEFAULT_COLLATION_NAME=$(mysql --silent --skip-column-names --user=${CLOUDRON_MYSQL_USERNAME} --password=${CLOUDRON_MYSQL_PASSWORD} --host=${CLOUDRON_MYSQL_HOST} ${CLOUDRON_MYSQL_DATABASE} -e "SELECT DEFAULT_COLLATION_NAME FROM information_schema.SCHEMATA WHERE SCHEMA_NAME = '${CLOUDRON_MYSQL_DATABASE}';" 2>/dev/null)
   FIX_NEEDED=0
   
   if [ "${CURRENT_DEFAULT_CHARACTER_SET_NAME}" != "utf8mb4" ] || [ "${CURRENT_DEFAULT_COLLATION_NAME}" != "utf8mb4_unicode_ci" ]; then
       echo "=> DEFAULT_CHARACTER_SET_NAME or DEFAULT_COLLATION_NAME is not set to utf8mb4 or utf8mb4_unicode_ci."
       echo "==> Current values are: DEFAULT_CHARACTER_SET_NAME=${CURRENT_DEFAULT_CHARACTER_SET_NAME}, DEFAULT_COLLATION_NAME=${CURRENT_DEFAULT_COLLATION_NAME}"
       FIX_NEEDED=1
   else
       echo "=> DEFAULT_CHARACTER_SET_NAME is ${CURRENT_DEFAULT_CHARACTER_SET_NAME} and DEFAULT_COLLATION_NAME is ${CURRENT_DEFAULT_COLLATION_NAME}"
       echo "=> Nothing to do - quitting."
       FIX_NEEDED=0
       exit 0
   fi
   
   if [ ${FIX_NEEDED} -eq 1 ]; then
       read -p "Have you created a backup of your Cloudron Vaultwarden app? (y/N): " yn
       case $yn in
           [Yy]* )
               echo "=> Setting database character set and collation to utf8mb4 and utf8mb4_unicode_ci."
               mysql --user=${CLOUDRON_MYSQL_USERNAME} --password=${CLOUDRON_MYSQL_PASSWORD} --host=${CLOUDRON_MYSQL_HOST} ${CLOUDRON_MYSQL_DATABASE} -e "ALTER DATABASE \`${CLOUDRON_MYSQL_DATABASE}\` CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;" 2>/dev/null
               echo "=> Converting all tables to character set utf8mb4 and collation utf8mb4_unicode_ci."
               mysql --silent --skip-column-names \
     --user="${CLOUDRON_MYSQL_USERNAME}" \
     --password="${CLOUDRON_MYSQL_PASSWORD}" \
     --host="${CLOUDRON_MYSQL_HOST}" \
     "${CLOUDRON_MYSQL_DATABASE}" \
     -e "SELECT CONCAT('ALTER TABLE \`', TABLE_NAME,'\` CONVERT TO CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;') AS CharSetConvert FROM INFORMATION_SCHEMA.TABLES WHERE TABLE_SCHEMA='${CLOUDRON_MYSQL_DATABASE}' AND TABLE_TYPE=\"BASE TABLE\";" 2>/dev/null | while read -r sql_command; do
                   echo "==> Executing: ${sql_command}"
                   mysql --user=${CLOUDRON_MYSQL_USERNAME} --password=${CLOUDRON_MYSQL_PASSWORD} --host=${CLOUDRON_MYSQL_HOST} ${CLOUDRON_MYSQL_DATABASE} -e "SET foreign_key_checks=0; ${sql_command} SET foreign_key_checks=1;" 2>/dev/null
               done
               ;;
           [Nn]* )
               echo "=> Please create a backup of your database before proceeding with the fix. Exiting."
               exit 1
               ;;
           * )
               echo "=> Invalid response. Please answer with y or n. Exiting."
               exit 1
               ;;
       esac
   fi
   

5. open the Web Terminal of your @vaultwarden Cloudron app
6. execute the following command:

   bash /app/data/fix_db.sh
   

7. Execute the following command to start @vaultwarden:

   /app/pkg/start.sh
   

8. Validate if your @vaultwarden is now working correctly
9. If validated working, you can delete the fix_db.sh file and disable the recovery mode of your @vaultwarden Cloudron app

---

If you run into any issues, copy the output of the terminal, post it here and restore your app from the backup created.

[ekevu123]

I confirm this works!

[andreasdueren]

@james this won’t fix the issue of logging everyone out though I assume?

Edit: just saw the newest update.