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  3. Apps Stuck Updating - Cleaning up old install - even after stopping/restarting task

Apps Stuck Updating - Cleaning up old install - even after stopping/restarting task

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  • jdaviescoatesJ jdaviescoates

    @jdaviescoates said in Apps Stuck Updating - Cleaning up old install - even after stopping/restarting task:

    my backup destination had become unmounted which was stopping updates working because they couldn't backup first,

    But now the backup destination is reconnected they are still getting stuck at "Updating - Cleaning up old install".

    This topic is NOT solved.

    Either Cloudron 7.3.2 borked or Netcup is no longer compatible with Cloudron, or 🤷 ?

    nebulonN Away
    nebulonN Away
    nebulon
    Staff
    wrote on last edited by
    #21

    @jdaviescoates I feel like this topic mixes different issues. If app tasks are queued, then this is mostly the case if the system backup or too many tasks are currently running.

    humptydumptyH jdaviescoatesJ 2 Replies Last reply
    0
    • nebulonN nebulon

      @jdaviescoates I feel like this topic mixes different issues. If app tasks are queued, then this is mostly the case if the system backup or too many tasks are currently running.

      humptydumptyH Offline
      humptydumptyH Offline
      humptydumpty
      wrote on last edited by humptydumpty
      #22

      @nebulon true. It just happened to me again. Automatic updates don’t seem to run. Unless you pushed these updates after my scheduled auto updater. So i tried to update them manually and the app got stuck at cleaning up old install again. I restarted the server and it manually updated just fine. I’ll refrain from manually updating apps until i confirm the auto updates are working and will report back.

      @jdaviescoates I’m with Contabo on an NVME plan. What’s yours?

      jdaviescoatesJ 1 Reply Last reply
      0
      • nebulonN nebulon

        @jdaviescoates I feel like this topic mixes different issues. If app tasks are queued, then this is mostly the case if the system backup or too many tasks are currently running.

        jdaviescoatesJ Offline
        jdaviescoatesJ Offline
        jdaviescoates
        wrote on last edited by
        #23

        @nebulon no, that wasn't the reason for the queueing thing flashing up, it was because the backup destination was unmounted (as mentioned above)

        This issue needs a proper investigation, I've emailed support@ and enabled SSH access for you on my server.

        There are lots of outstanding updates so hopefully you'll be able to reproduce (but perhaps you won't able to because I just rebooted the server which seems to temporarily make updates wotk again)

        I use Cloudron with Gandi & Hetzner

        1 Reply Last reply
        0
        • humptydumptyH humptydumpty

          @nebulon true. It just happened to me again. Automatic updates don’t seem to run. Unless you pushed these updates after my scheduled auto updater. So i tried to update them manually and the app got stuck at cleaning up old install again. I restarted the server and it manually updated just fine. I’ll refrain from manually updating apps until i confirm the auto updates are working and will report back.

          @jdaviescoates I’m with Contabo on an NVME plan. What’s yours?

          jdaviescoatesJ Offline
          jdaviescoatesJ Offline
          jdaviescoates
          wrote on last edited by
          #24

          @humptydumpty said in Apps Stuck Updating - Cleaning up old install - even after stopping/restarting task:

          @jdaviescoates I’m with Contabo on an NVME plan. What’s yours?

          Netcup, same as @avatar1024

          I never previously hit these issues with Hetzner

          I use Cloudron with Gandi & Hetzner

          1 Reply Last reply
          1
          • girishG Do not disturb
            girishG Do not disturb
            girish
            Staff
            wrote on last edited by girish
            #25

            Yeah, I also think this post is mixing different situations. The "cleaning up old install" message is a known one in contabo. This is related to docker just getting stuck with those server. I don't know why it gets stuck and this is really hard to figure out without help from the VPS provider.

            The other issue which @jdaviescoates is facing is backup not being mounted. This will make updates not work at all. Is there a notification in the eventlog about the failed update?

            jdaviescoatesJ 1 Reply Last reply
            0
            • girishG girish

              Yeah, I also think this post is mixing different situations. The "cleaning up old install" message is a known one in contabo. This is related to docker just getting stuck with those server. I don't know why it gets stuck and this is really hard to figure out without help from the VPS provider.

              The other issue which @jdaviescoates is facing is backup not being mounted. This will make updates not work at all. Is there a notification in the eventlog about the failed update?

              jdaviescoatesJ Offline
              jdaviescoatesJ Offline
              jdaviescoates
              wrote on last edited by
              #26

              @girish said in Apps Stuck Updating - Cleaning up old install - even after stopping/restarting task:

              The "cleaning up old install" message is a known one in contabo.

              @avatar1024 and I have both hit this on Netcup too

              I use Cloudron with Gandi & Hetzner

              imc67I 1 Reply Last reply
              0
              • jdaviescoatesJ jdaviescoates

                @girish said in Apps Stuck Updating - Cleaning up old install - even after stopping/restarting task:

                The "cleaning up old install" message is a known one in contabo.

                @avatar1024 and I have both hit this on Netcup too

                imc67I Offline
                imc67I Offline
                imc67
                translator
                wrote on last edited by
                #27

                @jdaviescoates @girish me too

                1 Reply Last reply
                1
                • humptydumptyH humptydumpty

                  I have 3 apps that are stuck applying updates. The status of all 3 apps are identical in the stage of " Updating - Cleaning up old install ". What should I do now?

                  Cloudron v7.3.2 (Ubuntu 20.04.3 LTS)

                  The three sites are:

                  • ghost blog
                  • wordpress dev site
                  • listmonk

                  Here are the most recent logs under System Info > Logs

                  Nov 19 09:29:50 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:30:00 box:disks checkDiskSpace: checking disk space
                  Nov 19 09:30:00 box:janitor Cleaning up expired tokens
                  Nov 19 09:30:00 box:janitor Cleaned up 0 expired tokens
                  Nov 19 09:30:00 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:30:00 box:disks checkDiskSpace: disk space checked. out of space: no
                  Nov 19 09:30:10 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:30:20 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:30:30 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:30:40 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:30:50 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:31:00 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:31:10 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:31:20 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:31:30 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:31:40 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:31:50 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:32:00 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:32:10 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:32:20 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:32:30 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:32:36 box:locker Lock unreleased apptask
                  Nov 19 09:32:40 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:32:50 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:33:00 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:33:10 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:33:20 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:33:30 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:33:40 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:33:50 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:34:00 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:34:10 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:34:20 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:34:30 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:34:40 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:34:50 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:35:00 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:35:10 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:35:20 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:35:30 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:35:40 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:35:50 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:36:00 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:36:08 box:updatechecker checkBoxUpdates: checking for updates
                  Nov 19 09:36:08 box:updatechecker checkBoxUpdates: no updates
                  Nov 19 09:36:08 box:updatechecker checkAppUpdates: checking for updates
                  Nov 19 09:36:10 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:36:14 box:updatechecker checkBoxUpdates: checking for updates
                  Nov 19 09:36:14 box:updatechecker checkBoxUpdates: no updates
                  Nov 19 09:36:14 box:updatechecker checkAppUpdates: checking for updates
                  Nov 19 09:36:19 box:updatechecker checkBoxUpdates: checking for updates
                  Nov 19 09:36:19 box:updatechecker checkBoxUpdates: no updates
                  Nov 19 09:36:19 box:updatechecker checkAppUpdates: checking for updates
                  Nov 19 09:36:20 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:36:30 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:36:40 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:36:50 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:36:52 box:updatechecker checkBoxUpdates: checking for updates
                  Nov 19 09:36:52 box:updatechecker checkBoxUpdates: no updates
                  Nov 19 09:36:52 box:updatechecker checkAppUpdates: checking for updates
                  Nov 19 09:36:57 box:updatechecker checkBoxUpdates: checking for updates
                  Nov 19 09:36:58 box:updatechecker checkBoxUpdates: no updates
                  Nov 19 09:36:58 box:updatechecker checkAppUpdates: checking for updates
                  Nov 19 09:37:00 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:37:01 box:updatechecker checkBoxUpdates: checking for updates
                  Nov 19 09:37:01 box:updatechecker checkBoxUpdates: no updates
                  Nov 19 09:37:01 box:updatechecker checkAppUpdates: checking for updates
                  Nov 19 09:37:06 box:updatechecker checkBoxUpdates: checking for updates
                  Nov 19 09:37:06 box:updatechecker checkBoxUpdates: no updates
                  Nov 19 09:37:06 box:updatechecker checkAppUpdates: checking for updates
                  Nov 19 09:37:10 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:37:20 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:37:30 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:37:36 box:locker Lock unreleased apptask
                  Nov 19 09:37:40 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:37:50 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:38:00 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:38:10 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:38:20 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:38:30 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:38:40 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:38:50 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:39:00 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:39:10 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:39:20 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:39:30 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:39:40 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:39:50 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:40:00 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:40:00 box:cloudron Getting logs for box as json
                  Nov 19 09:40:10 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:40:20 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:40:30 box:apphealthmonitor app health: 21 alive / 4 dead.
                  Nov 19 09:40:40 box:apphealthmonitor app health: 21 alive / 4 dead.
                  

                  Note: It states 4 dead sites. One of them is a purposefully stopped app so please disregard that.

                  Services just keep on spinning for some:

                  bfeb845a-3df7-46c0-a5a5-9046b6d638dc-image.png

                  Disk is not full

                  1432246b-2f3f-4bce-a0da-573d1129e14c-image.png

                  Boot is fine

                  df47f303-29c6-475f-855d-dc7976ed2173-image.png

                  P Offline
                  P Offline
                  p44
                  translator
                  wrote on last edited by
                  #28

                  @humptydumpty Hello, I've "Configuring - Cleaning up old install" problem too updating LAMPP

                  girishG 1 Reply Last reply
                  1
                  • P p44

                    @humptydumpty Hello, I've "Configuring - Cleaning up old install" problem too updating LAMPP

                    girishG Do not disturb
                    girishG Do not disturb
                    girish
                    Staff
                    wrote on last edited by
                    #29

                    @p44 where is your server hosted?

                    P 1 Reply Last reply
                    1
                    • girishG girish

                      @p44 where is your server hosted?

                      P Offline
                      P Offline
                      p44
                      translator
                      wrote on last edited by p44
                      #30

                      @girish Hetzner VPS

                      Edit:

                      • Also "Recovering" backup it was impossible, always stucked on "Cleaning up old install".

                      So I rebooted while stucked on recovering old backup and recovering process was ok.

                      Now LAMPP is running with older version previous to 3.0.0 package

                      1 Reply Last reply
                      1
                      • girishG Do not disturb
                        girishG Do not disturb
                        girish
                        Staff
                        wrote on last edited by
                        #31

                        Ok, I think maybe this is storage box related.

                        @p44 @imc67 @jdaviescoates are you guys using storage box/ CIFS ?

                        P jdaviescoatesJ imc67I 3 Replies Last reply
                        2
                        • girishG girish

                          Ok, I think maybe this is storage box related.

                          @p44 @imc67 @jdaviescoates are you guys using storage box/ CIFS ?

                          P Offline
                          P Offline
                          p44
                          translator
                          wrote on last edited by
                          #32

                          @girish Ok, yes I'm using storage box/CIFS with Hetzner Storage Box service

                          1 Reply Last reply
                          1
                          • imc67I imc67 referenced this topic on
                          • girishG girish

                            Ok, I think maybe this is storage box related.

                            @p44 @imc67 @jdaviescoates are you guys using storage box/ CIFS ?

                            jdaviescoatesJ Offline
                            jdaviescoatesJ Offline
                            jdaviescoates
                            wrote on last edited by
                            #33

                            @girish said in Apps Stuck Updating - Cleaning up old install - even after stopping/restarting task:

                            Ok, I think maybe this is storage box related.

                            @p44 @imc67 @jdaviescoates are you guys using storage box/ CIFS ?

                            Yes, indeed I am, @avatar1024 too, I think.

                            But I've been using it for ages before hitting this problem.

                            Saying that, previously it was a filesystem mount and not a CIFS.

                            Well, it was a CIFS, but not set-up by Cloudron, manually set-up by editing fstab following these instructions https://docs.hetzner.com/robot/storage-box/access/access-samba-cifs

                            Anyways, I only started hitting this issue once I moved from Hetzner Cloud VPS to Netcup vServer.

                            I use Cloudron with Gandi & Hetzner

                            girishG 1 Reply Last reply
                            0
                            • jdaviescoatesJ jdaviescoates

                              @girish said in Apps Stuck Updating - Cleaning up old install - even after stopping/restarting task:

                              Ok, I think maybe this is storage box related.

                              @p44 @imc67 @jdaviescoates are you guys using storage box/ CIFS ?

                              Yes, indeed I am, @avatar1024 too, I think.

                              But I've been using it for ages before hitting this problem.

                              Saying that, previously it was a filesystem mount and not a CIFS.

                              Well, it was a CIFS, but not set-up by Cloudron, manually set-up by editing fstab following these instructions https://docs.hetzner.com/robot/storage-box/access/access-samba-cifs

                              Anyways, I only started hitting this issue once I moved from Hetzner Cloud VPS to Netcup vServer.

                              girishG Do not disturb
                              girishG Do not disturb
                              girish
                              Staff
                              wrote on last edited by
                              #34

                              @jdaviescoates Initial hypothesis is that maybe hetzner storage box had a "reset" on their side . CIFS mounts are not auto-mounted (whether by Cloudron or not) because the mount system doesn't have such a feature. So, we were thinking the backups stopped working and when they stop working, updates were getting stuck.

                              jdaviescoatesJ 1 Reply Last reply
                              1
                              • girishG girish

                                @jdaviescoates Initial hypothesis is that maybe hetzner storage box had a "reset" on their side . CIFS mounts are not auto-mounted (whether by Cloudron or not) because the mount system doesn't have such a feature. So, we were thinking the backups stopped working and when they stop working, updates were getting stuck.

                                jdaviescoatesJ Offline
                                jdaviescoatesJ Offline
                                jdaviescoates
                                wrote on last edited by
                                #35

                                @girish said in Apps Stuck Updating - Cleaning up old install - even after stopping/restarting task:

                                @jdaviescoates Initial hypothesis is that maybe hetzner storage box had a "reset" on their side . CIFS mounts are not auto-mounted (whether by Cloudron or not) because the mount system doesn't have such a feature. So, we were thinking the backups stopped working and when they stop working, updates were getting stuck.

                                Thanks for investigating, but I'm not sure that is it.

                                I only say that because right now I've got 3 apps stuck on "Updating - Cleaning up old install"

                                c9371a8b-1ad7-4c01-80a7-3416006c1684-image.png

                                043f88d6-c407-44da-8475-f9b79ea89227-image.png

                                489a6e92-da88-4a1f-a01f-44efd50dd799-image.png

                                And yet the backup drive is mounted fine:

                                Screenshot from 2022-11-21 11-07-30.png

                                I use Cloudron with Gandi & Hetzner

                                1 Reply Last reply
                                0
                                • girishG Do not disturb
                                  girishG Do not disturb
                                  girish
                                  Staff
                                  wrote on last edited by
                                  #36

                                  Thanks for @jdaviescoates for access to his system.

                                  Basically, docker just stops working for some reason. The command below just hangs.

                                  root@v2202211129685206445:/home/yellowtent/platformdata/logs/70b06ed9-1257-46d1-9fe9-1ffa7c722f21# docker stop d3ef55aa711f8d424f53bbef6a5ac813e9670cf89e77eaa171762dc524610ebc
                                  

                                  I see that docker is a few versions behind and there is a bunch of stuff related to locks and races, I have gone ahead and updated docker. @jdaviescoates Can you let me know if you hit this again? In the meantime, I will put the docker update in our ci for 7.3.3.

                                  jdaviescoatesJ 1 Reply Last reply
                                  2
                                  • girishG girish

                                    Thanks for @jdaviescoates for access to his system.

                                    Basically, docker just stops working for some reason. The command below just hangs.

                                    root@v2202211129685206445:/home/yellowtent/platformdata/logs/70b06ed9-1257-46d1-9fe9-1ffa7c722f21# docker stop d3ef55aa711f8d424f53bbef6a5ac813e9670cf89e77eaa171762dc524610ebc
                                    

                                    I see that docker is a few versions behind and there is a bunch of stuff related to locks and races, I have gone ahead and updated docker. @jdaviescoates Can you let me know if you hit this again? In the meantime, I will put the docker update in our ci for 7.3.3.

                                    jdaviescoatesJ Offline
                                    jdaviescoatesJ Offline
                                    jdaviescoates
                                    wrote on last edited by
                                    #37

                                    @girish said in Apps Stuck Updating - Cleaning up old install - even after stopping/restarting task:

                                    Thanks for @jdaviescoates for access to his system.

                                    You're welcome! Thanks for investigating.

                                    @girish said in Apps Stuck Updating - Cleaning up old install - even after stopping/restarting task:

                                    Can you let me know if you hit this again?

                                    Will do!

                                    @girish said in Apps Stuck Updating - Cleaning up old install - even after stopping/restarting task:

                                    I will put the docker update in our ci for 7.3.3

                                    Presumably until 7.3.3 is released and I upgrade I'll likely keep hitting this issue, right?

                                    I use Cloudron with Gandi & Hetzner

                                    girishG 1 Reply Last reply
                                    0
                                    • jdaviescoatesJ jdaviescoates

                                      @girish said in Apps Stuck Updating - Cleaning up old install - even after stopping/restarting task:

                                      Thanks for @jdaviescoates for access to his system.

                                      You're welcome! Thanks for investigating.

                                      @girish said in Apps Stuck Updating - Cleaning up old install - even after stopping/restarting task:

                                      Can you let me know if you hit this again?

                                      Will do!

                                      @girish said in Apps Stuck Updating - Cleaning up old install - even after stopping/restarting task:

                                      I will put the docker update in our ci for 7.3.3

                                      Presumably until 7.3.3 is released and I upgrade I'll likely keep hitting this issue, right?

                                      girishG Do not disturb
                                      girishG Do not disturb
                                      girish
                                      Staff
                                      wrote on last edited by
                                      #38

                                      @jdaviescoates I updated the docker on your server already . That's why, please let us know if you hit the issue again (which then means that docker upgrade didn't fix the issue).

                                      But regardless, I will keep the docker update as part of 7.3.3 unless something else breaks. So, you won't have troubles after updating as well.

                                      jdaviescoatesJ humptydumptyH 2 Replies Last reply
                                      1
                                      • girishG girish

                                        @jdaviescoates I updated the docker on your server already . That's why, please let us know if you hit the issue again (which then means that docker upgrade didn't fix the issue).

                                        But regardless, I will keep the docker update as part of 7.3.3 unless something else breaks. So, you won't have troubles after updating as well.

                                        jdaviescoatesJ Offline
                                        jdaviescoatesJ Offline
                                        jdaviescoates
                                        wrote on last edited by
                                        #39

                                        @girish said in Apps Stuck Updating - Cleaning up old install - even after stopping/restarting task:

                                        @jdaviescoates I updated the docker on your server already . That's why, please let us know if you hit the issue again (which then means that docker upgrade didn't fix the issue).

                                        Ah, right, got it, thanks! Will see what happens going forward...

                                        I use Cloudron with Gandi & Hetzner

                                        1 Reply Last reply
                                        0
                                        • girishG girish

                                          Ok, I think maybe this is storage box related.

                                          @p44 @imc67 @jdaviescoates are you guys using storage box/ CIFS ?

                                          imc67I Offline
                                          imc67I Offline
                                          imc67
                                          translator
                                          wrote on last edited by
                                          #40

                                          @girish for backups yes

                                          1 Reply Last reply
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