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Not 100% sure but are there any files under /home/yellowtent/boxdata/mail/spamd/<mailboxname> ? Those are the per mailbox spamassassin bayes databases. Maybe it's picking up something from there?
@girish Did anything come of this...?
(still an issue - also possibly related to https://forum.cloudron.io/topic/4921/bayes_00-rule-set-for-some-mail-to-mailing-list-no-mailbox/1 ?)
